Telopea speciosissima (New South Wales waratah): 122660238
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Entry
122660238 CDS
T07910
Name
(RefSeq) Fanconi anemia group J protein homolog isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122660238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tss03400
]
122660238
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122660238
DNA repair and recombination proteins [BR:
tss03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
122660238
FA (Fanconi anemia) pathway
Downstream FA components
122660238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
Yippee-Mis18
CBP_BcsF
Motif
Other DBs
NCBI-GeneID:
122660238
NCBI-ProteinID:
XP_043711393
LinkDB
All DBs
Position
4:8135040..8162869
Genome browser
AA seq
1266 aa
AA seq
DB search
MDSTAPAPNTNPNNTSGVYHIGGIPVEFPYKPYGSQLAFMGRVISTLDRAQIQGHSHALL
ESPTGTGKSLSLLCSTLAWQQNYKTKILSQSKPAPEALSDPLAHGGGFIPEPEPSGNSIP
ETLQPSPSARNSRSQKMPKIPTIFYASRTHTQISQLIREYRKTSYRVKMAVLASRKHYCT
NKHICGQENIDAECKKLLKDGECFESKNMLKVVTHQSLQSGGCHEAHDIEDLVKVGQSVK
GCSYYAARHMAKDARLVFCPYNYVINPITRRAMEVDLEGSILILDEAHNIEDMAREAGSL
DVEEDALDALQTELGQLCLSDSTIYQPLHETIEGIISWIGQRKSTLQKHEFQHYCTCWTG
EKALRELQEAGISKQCFPILQDCASKAIKDASIVDSDVVGLSGMSAAVLEGLFSAFSYFF
SGNGLHIHDYQLVLQRYAKRVGEHDGSWKHSFSLWCLNPAVVFREIANLSMSVILTSGTL
SPMGSFSSELGVQFETCIEAPHVIDVDTQLWAAAISTGCGNYPLNASYKTADCYAFQDAL
GATLEEICKIVPDGALVFFPSYHLMEKLCNRWRETGQWSRLNAQKPLFVEPRGNQEDFEL
ALKGYFYSIRQGNGPTFKKRRGKKRDLNQLDAKSPQKTSKGGAALLAVCRGKVSEGIDFS
DDNARVVIIVGIPFPNVHDIKVAQKKKYNDTYKSSKNLLSGSQWYCHQAFRALNQAAGRC
IRHRFDYGAIIFIDERYKEDRNKAHISKWIRKSIKQYGDFDMSIEGLQSFFRDAKEKYGP
NEMNVLDTPNIKEENVLCTKRKSLSKGAVRKKVQKMHKHDNDEHGVSYSSITTENENQYS
QFVMSRSKDVPTLPQVKVQCGVEDEAFVPLVEKDLGSYKEYIDLDCSSKTDSRWSEAIPM
PSFNESRENILVKETPGLGENGTVGSPQDFPKDDNSNITIFQASNELSDQLSLHSTSLAS
PSGAVSRGICFLMVTPERNVTMDICDKKSENESLNLSVNSHTQKWRKQTSSPSVKLIQDK
QFDTPDAKFPSHVECIGSVGSSKDASRKIEFGLEVKNLICKHKKLNLSQMLPVNNYGTSY
ASSSTVLDEILYICCSICKNPLGLPENHFLVTCSLVLSSKVYLASLRESRGASPPRNRSI
TVPVLISDISSVDQRLYNRLVLDCAQKHGVWCEEDGCVFGTVFCPFCSIPDNCLGLKIMA
TDSSNVHLLNKILFYIDHLQIKNLEESKDEVLVLPSIDQFSSLPPQNSEGWRTTKAKLRL
PKRGLP
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggattcgacggcacccgcaccaaacactaaccctaacaatactagcggcgtctaccac
attggggggattcctgtcgagttcccgtacaaaccctatggtagtcagctggcattcatg
ggcagggtgatatcaaccctagatcgagctcagattcaaggccattctcatgcattactt
gaatcaccaaccggtactgggaaatcgctgtcgctcctctgttctacgcttgcctggcag
cagaattacaaaacgaagattctctctcaatccaaaccagcccccgaggccttatctgat
ccacttgcacatggtggtggatttattcctgaaccagaaccttccggtaattcaataccg
gaaactctacaaccatctccatctgcaaggaacagtaggagtcaaaagatgccgaaaatt
cctaccatcttttatgcctcgaggacacatacacagattagtcaattgatccgggaatac
cgcaaaacatcatatcgagttaaaatggcagttttggcatcacgaaaacactactgcacc
aacaagcacatatgtggacaagagaatattgatgcggaatgcaagaagcttctgaaggat
ggagaatgttttgaatccaaaaacatgcttaaagtcgtaactcaccaatcattacaaagt
ggcggctgccatgaggcccatgatatcgaagaccttgtgaaagtcggacaatctgtcaaa
ggttgttcttactatgcagcacgccatatggcaaaagatgcacgacttgttttttgtcca
tacaactacgtaataaatccaataactcggagagcaatggaagtagatcttgaaggatcg
attctcattctagatgaagcccataatatagaggacatggcacgtgaagctggtagtttg
gatgttgaagaagatgcgttggatgcgttgcagacagaattagggcaactgtgcttatct
gattcaacaatttaccaacctctacacgagacaattgagggaattataagttggattggc
cagaggaaaagtaccttgcagaagcatgaatttcagcactactgcacttgttggactggt
gaaaaggccttaagagagcttcaagaggctggtatttctaaacagtgcttcccaatcttg
caagactgtgcatcaaaggcaatcaaagatgcatcgattgtggattctgatgtagttggt
ctaagtggcatgtctgcagcggtactggaagggcttttctctgcgttcagttattttttc
tctggaaatgggcttcatatccatgactatcagcttgttttacaacgctatgcaaaaaga
gttggggaacatgatggcagctggaaacattctttcagtctatggtgtctgaatcctgca
gttgttttcagagaaattgcgaatctttctatgtccgtgattcttacatccgggacatta
tctccaatgggatcattttcatctgaacttggagtccagtttgaaacttgtattgaagct
ccacatgtaatcgatgttgatacacagctatgggctgctgccatttctactggttgtgga
aactacccattgaatgcaagctacaaaacagctgactgttatgcttttcaggatgccctc
ggtgccactttagaggaaatctgtaagattgtgccagatggtgctcttgttttcttcccc
agctatcatttgatggaaaagctatgcaaccgttggcgtgaaacagggcaatggtctcgg
ttaaatgcacaaaaaccgctttttgttgagccaagaggaaatcaggaggattttgagctt
gctttgaagggttatttttattcaattcgtcaaggtaatgggcctacttttaagaaacga
agggggaaaaaacgtgaccttaaccagcttgatgcaaagtcccctcagaagacttcaaag
ggcggtgctgctttacttgctgtgtgcagaggaaaggtctcagaagggattgacttttct
gatgacaatgctcgagttgttataattgtcggcattccatttccaaatgtacatgatatt
aaagtggcacagaaaaagaaatataatgacacttacaagtcatccaaaaatcttctaagt
gggagccagtggtattgccaccaggcattccgtgctttgaaccaggctgcaggccgttgc
atacgtcatagatttgactatggagccattatatttatagatgaacgatataaggaagat
aggaataaagcacacatttcgaagtggataaggaaatccatcaaacagtatggcgatttt
gacatgtcaatagaaggattacagtcatttttccgagatgcaaaggaaaaatatgggcca
aatgaaatgaatgtgttggacactccaaacattaaagaggaaaatgtcctgtgtacaaaa
cgaaagtctttaagcaaaggagctgtgagaaagaaagttcagaaaatgcacaagcatgat
aatgatgaacatggagtaagttacagcagtataacaactgaaaatgaaaatcaatactct
cagtttgtgatgtctaggagcaaggatgttcccaccctgccccaagtgaaagttcaatgt
ggtgttgaagatgaagcatttgttccactcgttgagaaggatttgggtagctacaaagaa
tatattgacttagattgcagttctaaaacagactcgaggtggtcagaggctatacctatg
ccatcctttaatgagagtcgagaaaatatcctagtcaaggaaacacctggtttgggtgag
aatggaactgttggtagtcctcaagactttcccaaggatgacaactcaaatataaccata
tttcaggcctccaatgagttatcagaccaactttcattgcattcgacatccttagcaagt
ccaagtggagctgtttcgcgaggcatatgttttttgatggttactcctgaaaggaatgtt
actatggacatctgtgataaaaaatcagaaaatgaatctttgaatttgagtgtaaattct
catacccagaaatggcgaaagcaaacgagttctccatcagtaaagttaattcaagataaa
cagtttgatactcctgatgccaagtttcctagccatgttgagtgcattggaagtgtgggt
tcatctaaagatgcgagtcgcaaaattgaatttggtttggaggtcaagaaccttatatgc
aaacacaagaagctgaatctttcacaaatgctcccagtgaacaactatggcacctcatat
gcatcttccagtactgtcttggatgagatattatatatttgttgctcaatctgcaaaaac
ccattggggttgcctgagaatcatttccttgttacatgctctttagttttgtcttcaaaa
gtatacttggcatccctccgggaaagtcgaggtgcatctccacccagaaatagatcaata
actgtaccagttctaatctctgatatctcatctgttgatcagcggctctataatagactt
gttcttgattgtgctcaaaagcatggtgtctggtgtgaagaagatggttgtgtttttggt
actgttttctgccccttctgttccatccctgacaattgcctcggtttaaagattatggca
actgattcatcaaatgttcacttacttaataagatcttgttttatattgatcatttgcaa
atcaagaatcttgaagaatcaaaagatgaggttttggtgttgccttcaatagatcaattt
tcttctttaccaccacagaattcagaaggctggagaactacaaaagctaagttgagacta
cccaaaagaggtctgccttag
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integrated database retrieval system
