Telopea speciosissima (New South Wales waratah): 122661784
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Entry
122661784 CDS
T07910
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03020
RNA polymerase
tss03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122661784
09124 Replication and repair
03420 Nucleotide excision repair
122661784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122661784
03400 DNA repair and recombination proteins [BR:
tss03400
]
122661784
Enzymes [BR:
tss01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122661784
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122661784
DNA repair and recombination proteins [BR:
tss03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122661784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_6
RNA_pol_Rpb1_2
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
122661784
NCBI-ProteinID:
XP_043713222
LinkDB
All DBs
Position
5:complement(17996419..18006542)
Genome browser
AA seq
1850 aa
AA seq
DB search
MDMRYQFSPSEVKKVRRVQFGILSPDEIRQMSVVQVEHSETTEKGKPKPGGLSDPRLGTI
DRKVKCETCNANMAECSGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK
FKQALRIKNPKHRMKKIMDACKNKAKCDGGDDIVEGQASEEPVKKSRGGCGAQQPKLTIE
GMKMVAEYKTQRKKNDDQDQLPEPVERKQQLSAERVLSVLKRISDEDSVKLGLNPEYARP
DWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISE
FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSVCSRLKAKEGRIRGNLMGKRVDFSART
VITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEFGPHPPPGKTGAKYIIRE
DGQRLDLRYLKKSSDHHLELGYKASSCFCIDCLDLFLDLSCSLNFKTFRFQVERHLQDGD
YVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSFETRAE
VLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITRRDTFIEKDVFMNILMWWEGFDGKI
PAPAILKPKPLWTGKQVFNLIIPKQINLLRTAAWHLESETGFITPCDTQVRIEKGELLSG
ILCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAAT
MEKINETISKAKSEVKELIKAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQK
SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIGRTLPHFTKDDYGPE
SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGT
VRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFNNVFKYEIDDENWNPSYMLPEH
VEDLKTIREFRNVFDAEVQKLEADRYQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKID
LRRPSDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKE
YRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV
TLGVPRLREIINVAKKIKTPSLSVYLKSEVSKTKEKAKNVQCALEYTTLRSVTQATEVWY
DPDPMSTIIEEDVDFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKI
NLEFDDDLTCIFNDDNAEKLILRIRIMNAEAPKGELQDESAEDDVFLKKIESNMLTEMAL
RGIPDINKVFIKSGKINKYDENEGFKPEVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLI
EVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRND
TGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQA
IELHLPSYMEGLNFGMTPSHSPITGTPYNEGMMSPSYLLSPNIRSSPITDAQFSPYVGGM
AFSPTSSPGYSPSSSGYSPTSPGYSLTSPGYSPSSPGYSPTSPTYSPSSPGYSPTSPAYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPTSPAYSPTSPVYSPTSPAYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPKSLAYSPTSPGYSPTSPSYSPTSPSYSP
TSPSYNSPSAKYSPLPYSPSSPRLSVSPSSPYSQSSPNYSPTSPTYSPTSPSYSPPSPSY
SPSSPYNSGQSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQLSKKK
NT seq
5553 nt
NT seq
+upstream
nt +downstream
nt
atggatatgcgataccagttctccccatccgaggtcaagaaagttcgccgagttcagttt
ggcatactaagtcctgatgaaattaggcaaatgtcagtggtgcaggtcgagcatagtgag
acgactgagaaggggaagccaaagcctggtggcttgagtgaccctcgacttggtactata
gacaggaaggtgaagtgtgagacttgtaatgctaacatggcggagtgttctgggcatttt
gggcaccttgagcttgctaagccaatgtttcatattggattcatgaagactgtacttagt
atcatgcgctgtgtttgcttcaattgttcaaaaatactcgtcgatgaggatgatcacaag
tttaagcaagctcttcgaattaaaaatccaaaacatagaatgaagaagattatggatgca
tgtaagaacaaagctaaatgtgatggtggtgatgatatagttgagggtcaagcttctgaa
gaaccagtaaagaagagtcggggtggctgtggtgcccaacagccaaagctcaccattgaa
ggtatgaaaatggttgcagaatacaagactcaaaggaagaaaaatgatgaccaggatcag
cttcctgaacctgtcgaaagaaaacaacagctttctgcagaaagggttctaagtgttctg
aagaggataagtgatgaagactcggtaaaattaggtctaaatcctgaatatgctcgccca
gattggatgattctacaagtccttccaattcctcctcctcctgtgagaccttcggtcatg
atggatacttcgtccaggagtgaggatgatttgacccatcagttggcgatgatcattaga
cacaatgagaatctgaggcgacaggagagaaatggggctcctgcacacatcatctcagaa
tttgcacagttactgcaatttcacatagcaacatattttgataatgagcttccgggtcag
ccgagggctactcagcggtctgggcggcctataaaatcggtatgtagcagacttaaggct
aaggaaggtcgaattagaggtaacttgatgggaaaacgagtagatttttcagcacggacc
gtcatcacacctgatccaaccattaacattgatgagctgggggtgccatggagcattgct
ttaaacttaacgtacccagaaactgtgactccatataacattgaaaggctgaaggaactt
gttgaatttggacctcatcctccacctggaaaaaccggtgccaagtatatcattagagaa
gatggacagaggttagatctacggtacttgaagaaaagtagtgatcaccatctagagctt
ggttacaaggcaagtagttgcttttgtatagactgtcttgatctcttcttggatctttca
tgttctctgaactttaaaacatttcggtttcaggttgagcggcacctacaggatggagat
tatgtgctctttaatcgacaacctagtctccataaaatgtctataatgggacacagaatc
aagattatgccatactcaacttttcgcttgaatttgtcagtgactaccccgtataatgct
gattttgatggagatgaaatgaatatgcatgttcctcagtcatttgaaaccagggcagag
gtattggagctcatgatggtacctaaatgcattgtgtcgcctcaagcaaataggcctgtt
atgggaattgtccaggatacactgttaggatgccgtaagataaccagaagagatacattc
attgagaaggatgtttttatgaacattttgatgtggtgggagggttttgatgggaagata
cctgctccggcaattttgaagcctaaacctctttggacaggaaagcaagtgtttaatctt
atcattccaaagcagataaatctcttgaggacagctgcatggcacttggagtctgaaaca
ggatttataactccatgtgatactcaagttagaatagagaaaggggagcttctttcaggc
attctttgtaaaaagacacttggaacatctactggaagtcttattcatgttatctgggaa
gaggttggtccagatgcggcccgcaaatttttgggacatactcagtggctcgttaactat
tggcttttgcagaatggttttagtattggaattggagacacaattgctgatgcggcaact
atggaaaaaatcaatgaaacaatttctaaagcaaagagtgaagtgaaagaacttatcaag
gctgctcaggaaaggcagctggaggctgaacctggtcgaacaatgatggaatcatttgaa
aacagagtgaaccaggtgttgaataaagctcgtgatgatgctgggagtagtgcccagaag
agcttgtctgagagtaacaatctcaaggcaatggttactgcagggtcaaaaggaagtttc
atcaatatttcacaaatgactgcttgtgtcggacaacagaatgttgaaggtaagaggatt
ccatttgggttcataggcagaacattacctcatttcaccaaggatgactatgggcctgaa
agtcgtggctttgtggaaaactcgtatctgcgtgggttgactccacaggaattctttttc
catgctatgggtggtagggaaggtttgattgatactgcagtcaagacttctgaaacaggg
tacatccagaggcgacttgtgaaggctatggaggatataatggtcaaatatgatgggaca
gtcaggaactcattgggggatgttattcagtttctttatggagaggatggtatggatgct
gtttggatcgaatcgcagaagttggactccttaaaaatgaagaagtcagagtttaataat
gttttcaaatatgagattgatgatgaaaactggaaccccagttatatgttaccagaacat
gttgaagatttgaaaaccattagggagtttcgcaatgtctttgatgcagaagttcagaaa
ctggaagcggatagataccagcttggaacagagattaccaccacaggtgataactcctgg
cctatgcctgtgaacctcaagaggctaatttggaatgcacagaaaacttttaagattgac
ttgcgaagaccatctgatatgcatccaatggagattgtggaggccgttgataaacttcag
gagaggctgaaggttgtcccgggtgatgattttctgagtatggaagcccagaaaaatgcc
acccttttttttaacatattgcttcgtagtacatttgccagcaaaagggtattgaaagaa
tacaggcttacgcgtgaagcatttgagtgggttattggtgagatagaatctcgtttttta
cagtcactagttgcccctggagaaatgattgggtgcgttgctgctcaatccattggtgag
cctgctacccagatgactctgaacaccttccactatgctggagtcagtgctaagaatgtc
actctgggtgttcccaggctgagggaaattattaatgttgctaagaaaatcaaaacccct
tcactgtctgtttatctgaagtctgaagtgagtaagactaaagagaaggccaagaatgtc
caatgtgctctggaatatactactttacggagtgttacccaagctactgaagtttggtat
gatccggacccaatgagcaccataatcgaagaggatgttgattttgtcaaatcatactat
gaaatgccagatgaagaggtcgcccctgagaaaatttcaccatggcttcttcggatagag
ttaaatcgtgagatgatggtggataaaaagttgagtatggctgacatagcagagaagatc
aaccttgaatttgatgacgatttaacctgtatatttaatgatgacaatgctgagaagctg
attctccgcatccgcatcatgaatgctgaggctccgaagggtgaattgcaggatgaatct
gccgaggatgacgttttccttaaaaagattgagagtaacatgctgactgaaatggccctt
cgaggcatcccagatattaataaagtttttatcaagtcaggaaagataaataaatatgat
gaaaatgaagggtttaagccggaagttgaatggatgctggatactgaaggcgtcaatctt
ctagctgttatgtgtcatgaggatgttgatgccacaaggacaacaagtaatcacttaatt
gaagtgattgaagttctgggaatcgaggctgttcgtcgagcactgctagatgagttgcga
gttgtcatctcttttgatggatcttatgtgaattataggcatctggccatcctctgtgat
accatgacttatcggggtcacttgatggccattactcgtcatggtattaatcggaatgat
actggaccaatgatgagatgctcattcgaggaaactgtggacattcttcttgatgctgct
gtttatgctgaaacagatcatctcaggggtgttactgaaaatattatgctaggtcaactt
gctccaattggcactggtgattgtgccttgtatctgaatgaccagatgctgcagcaagcc
attgaactccatctcccgagttatatggaaggtctaaattttggcatgacaccttcccat
tcaccgattacaggaactccctataacgagggcatgatgtcacctagttatttgctgagc
ccaaatatacgttcttcgcctataacagatgctcagttttctccttatgttggtggaatg
gccttctcacctacttcatccccaggctacagtccatcttcttctggatacagccccacc
tctcctggttatagcctcacctctccagggtacagccccagttcaccaggttacagccct
acttccccaacgtacagtccaagctctcctggctacagtccaacaagtcctgcatattct
cccacaagtccatcgtattcccctacctcacccagctatagtcctacatcacccagttac
agtcctacatctccaagttatagccccagttctcccagttacagccctacttctccagcc
tatagtcctacttctccagtttatagccccacatctcctgcatacagcccaacctcacca
tcttatagccctacctcaccatcatacagcccaacctctccatcatacagcccaacttca
ccttcctacagcccgacctctccatcatacagccctaagtctcttgcatatagcccgaca
tctccaggttacagcccaacctcgccaagttacagtccgacgtctccaagctacagccct
acatctccaagttacaactccccgtcagcaaaatacagtccactgccatactctccaagt
agtccaaggctgtcagtgtcaccctccagtccatatagtcagtcttctccaaattacagt
ccaacgtctccaacttattcaccaacttctccatcttattccccacccagtccctcatac
agtcccagcagtccttataattctggtcagagtccagactacagcccaagttctcctcag
tacagtccaagtgctgggtactcaccaaccgcgccaggctattcgccttcatcaactagt
cagtacaccccacaattaagcaaaaaaaaatga
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integrated database retrieval system
