Telopea speciosissima (New South Wales waratah): 122672763
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Entry
122672763 CDS
T07910
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122672763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122672763
Enzymes [BR:
tss01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
122672763
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122672763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
FtsK_SpoIIIE
SRPRB
ATP_bind_1
ABC_tran
AAA_29
GTP_EFTU
Motif
Other DBs
NCBI-GeneID:
122672763
NCBI-ProteinID:
XP_043726182
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All DBs
Position
8:complement(7918912..7946741)
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AA seq
443 aa
AA seq
DB search
MAYAGGGGAPGLGGLSSSSSTAIRQVKLDKECELRVEVGIESPLRLRLLTGTAEIFGTEL
PPEIWLTFPPRLKFAVFTWYGATIELDGITETDYTADETPMISYVNVHAILEGRRNRAKA
SSTSDSDSSQGPRVIVVGPTDSGKSTLSKMLLSWAAKQGWKPTFVDLDIGQGCITVPGCI
AATPIEMPIDPVEGIPLEMPLVYFFGHTTPSVNAELYKVLVKELSQTLEKQFSGNAEARA
AGMVINTMGWIEGVGYELLLHAIDTLNANVVLVLGQEKLCSMLKDVLRNKPHVDVVKLQR
SGGVVSRNAKVRQKARSYRIREYFYGIANDLSPHSNLVSFSDLFVYRIGGGPQAPRSALP
IGAEPAADPMRLVPVNINRDLIHLVLAVSYAKEPDQIISSNIAGFIYITDIDIPRKKITY
LAPSAGDLPSRYLIVGTLTWIET
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcttacgcaggtggtgggggtgcgccagggcttgggggactgtcgtcgtcctcgtcg
acggcgataagacaggtgaagctggacaaagagtgcgagctgagggtcgaagtcggcatt
gaatctcctcttcgcctccgtcttctcactggcactgcagaaatctttggcaccgaactc
cctcccgaaatttggcttactttccctcctcgtctcaaattcgctgttttcacttggtat
ggcgccacaattgaattggatgggattactgagactgattatactgcagatgagacacct
atgataagctatgtaaatgtacatgccatattggaagggcggaggaatcgtgccaaagca
tcctcaaccagtgactctgattcttctcagggccccagggtgattgttgtgggaccgaca
gattcaggaaagagtaccttgtcaaagatgcttcttagctgggcagctaaacaaggatgg
aaacccacttttgtagacttggatattggccagggatgtataaccgttccaggatgcatt
gctgctactccgatcgaaatgccaatagatccagtggaaggaatccctcttgaaatgccc
cttgtctacttttttgggcatacaacccctagtgtaaatgcagagttgtacaaggtgctt
gtgaaggagctttctcaaaccctagaaaaacaattttctggtaatgctgaagctcgtgct
gctggtatggtgattaataccatgggatggatagaaggtgttggttatgagttacttcta
catgcaattgacacactcaatgccaatgtagttttggttctgggccaggagaaactatgc
agcatgcttaaagatgttctgaggaataagcctcatgtggatgttgtgaaactccaaagg
tcgggtggcgttgtatcgaggaatgcaaaggttcgtcagaaggcaaggagctacaggata
agggaatacttctatggcattgcaaatgatctttcccctcactccaatcttgtgagtttc
agtgatttgtttgtatatcgaattggtggcgggcctcaagcaccacgttcagctctgcca
attggtgcggagcctgcagctgatcctatgcggctggtccctgtgaatatcaaccgtgac
cttattcatttagttcttgcagtgtcttatgcaaaagaacctgatcagattatttccagc
aacatagctggatttatctatatcactgacattgacattccgaggaagaagattacttac
cttgcaccatcagctggagacctcccgagtagatatttgatagttggaaccttgacgtgg
attgaaacgtga
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