Trachemys scripta elegans (red-eared slider): 117873131
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Entry
117873131 CDS
T07347
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117873131 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117873131 (CLP1)
Enzymes [BR:
tst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
117873131 (CLP1)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117873131 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
MMR_HSR1
AAA_16
AAA_22
TniB
AAA_18
Motif
Other DBs
NCBI-GeneID:
117873131
NCBI-ProteinID:
XP_034618075
LinkDB
All DBs
Position
2:complement(164285922..164290594)
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AA seq
494 aa
AA seq
DB search
MPPRTSGPGCARGLGSPGWLVYRQAAAGLYGIEMAEEAGDEKKQVAKFELERETELRFEV
EASQTVQLELLAGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCTVQLSGRTEVAYISKD
TPMLLYLNTHTALEQMRRQAEREDERGPRVMVVGPTDVGKSTVCRLLLNYAVRLGRRPTF
VELDVGQGSVSIPGTMGALYIERPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKCSLIC
FALPWKETGLHHGLEVTALGPTLPLTSCVTLITSRLADVFNQRCEVNRRASVSGCVINTC
GWVKGSGYHALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKD
FRRECRDDRIREYFYGFRGCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLK
LVPVTPGRDMVHHLLSVSTADGSEENISETSVAGFIVVTGVDVDRQVFTVLSPAPRPLPK
NFLLIMDIRFMDLK
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgcctccccgcacttccggccccggatgtgcgcgtggtcttgggtctcctggttggttg
gtttatcgccaggcagcggcgggcctatacgggatagagatggcagaggaggccggggat
gagaagaagcaggtggcaaagtttgagctggagcgggagacggagcttcgctttgaggtg
gaggcctcgcagactgtccagctggagctgctggcaggcatggcggagatttttggcacc
gagctgacccgtaacaagaagttcactttcgatgctggtgccaaggtggccgtgttcacg
tggcatggctgcacagtgcagctgagcggccgcactgaagtggcttacatatcgaaggac
acgcccatgctgctctacctcaacacccacacagccctggagcagatgcggcggcaggca
gagcgcgaggatgagcgggggccccgggtcatggtggtggggcctacggatgtgggtaag
tcgacagtgtgccggctgctgctgaactacgctgtgcggctggggcgccgacccaccttc
gtggagctggacgtgggccaaggctcggtctccatccctggcaccatgggggcactgtat
atcgagcggcctgctgatgtagaagagggtttctctgtccaggcccccttggtctatcac
tttggctccaccactccaggcaccaacatcaaactctataacaagtgctctttaatctgt
tttgcgctaccttggaaggaaacaggcttgcatcatggactggaagtcacggctctcgga
ccaactctgccactgacttcctgtgtgaccttgatcacatctcgcttggctgacgtcttt
aaccagcgctgcgaagtgaaccgccgggcttcagttagtggctgcgtcatcaatacgtgc
ggctgggtgaagggctccgggtaccacgccctggtgcatgctgcctcagcctttgaggtg
gatgtggtggtagtgctggaccaggagcgcctatacaatgagctgaagcgggacctgccc
cattttgtgcgcacagtgctgctccccaaatcaggtggggtggtagagcgctccaaggac
ttccggagggagtgccgggatgaccgcatccgtgagtacttttacggcttccgtggctgc
ttctacccccacgccttcgacgtcaaattctccgatgtcaagatctacaaggtgggggct
cccaccatccctgactcatgcttgcccctgggcatgtcgcaggaggataaccagctcaag
cttgtgccagtgacgccaggccgtgacatggtgcaccacctgctgagcgtcagcactgct
gatggcagtgaggagaacatctccgagactagcgtggctggcttcatcgtcgtcactggg
gtggacgtagatcgccaggtcttcacagtgctgtcaccggcacctcgcccactgcccaag
aactttctgctgatcatggacattcgcttcatggaccttaagtag
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