Trachemys scripta elegans (red-eared slider): 117874131
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Entry
117874131 CDS
T07347
Symbol
POLR1B
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2 isoform X1
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117874131 (POLR1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117874131 (POLR1B)
Enzymes [BR:
tst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117874131 (POLR1B)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
117874131 (POLR1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
117874131
NCBI-ProteinID:
XP_034619856
LinkDB
All DBs
Position
3:3671726..3707055
Genome browser
AA seq
1088 aa
AA seq
DB search
MCYTYRVSFGFQAIPALEFAFKNERITLAVVGAVISPPMVPKGSICKELKVYPAECRGRR
STYRGKLTADISWSVNGIPKGIIKQSLGYVPIMVKSKLCNLHSLPPRALIEHHEEEEEMG
GYFIVNGIEKVIRMLIMPRRNFPIAMIRPKWKSRGPGYTQYGISMHCVRDEHSAINMNLH
YLENGTVMLNFIFQKELFFLPLGFALKALVGFSDYQIFQELIKGREDNSFYKNCISQMLR
MVMEEGCATQKQVLNYIGKCFRVKLNLPEWYPNEQAAEFLLDQCICIHLKTKTEKFYLLC
LMTRKLFAFAKEECMEENPDSLMNQEVLTPGQLYLMFLKERMEAWLLSVKVALDKRSQKT
NVTINSENMMKLFSMGIDVTRPFEYLLATGNLRSKTGLGMLQDSGLCVVADKLNFIRYLS
HFRCVHRGAAFAKMRTTTVRKLLPESWGFLCPVHTPDGEPCGLMNHITTVCEIVTQSAYT
LSLPPLLCSLGVTPVDGTPSQPYAECYPVTLDGSLVGWVEKDMAPTIADTLRHFKVMQEK
KIPAWTEVVLIPMTGKPSLYPGLFIFTTPCRMVRPVRNLALGKEELIGTLEQVFMNIAVL
EDEIVPGVTTHQELFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRS
DNKLYRLQTPQSPLVRPSMYDYYDMDNYPVGTNAIVAVISYTGYDMEDAMIVSKASWERG
FAHGSVYKTESIDLAEKIKQVDDSLVFGVKPGDPRVIQNLDADGLPHIGSILQYGDPYYS
YLNLSTGESFITYYKSKESCIVDNIKVCSNDSGNGKFKSVCITMRIPRNPTIGDKFASRH
GQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDA
TPFTFSEENSALEYFGKMLKAAGYNYYGTERMYSGISGVELEADIFIGVVYYQRLRHMVS
DKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVA
HVCVKCGSLLSPLLEKPPPSWSTTRNRKYHCTVCNQSDTIDTVSVPYVFRYFVAELAAMN
IKVKLDVN
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgtgttatacatacagagtttcttttgggtttcaggctattcctgctctggagtttgct
ttcaaaaatgaacggatcactctggcagttgtgggcgctgtcatcagtcctcctatggtg
ccaaaagggagtatctgtaaagagctgaaagtgtacccagcagaatgtagaggacgcaga
agcacctatcgtgggaaactgaccgctgacatcagctggtcagtgaatggcattcctaaa
gggattattaaacagtccctgggatatgttccaatcatggtgaaatctaaactttgcaat
ctgcatagtcttcctcccagagctctgattgaacaccatgaagaagaggaggaaatggga
ggctattttatagttaacggtatagaaaaagttatcagaatgctgattatgcctagacga
aactttcccattgcaatgataagacccaaatggaaaagccgaggccctggttacacacag
tatggtatatcgatgcactgtgttagggatgagcactctgctataaacatgaaccttcac
tacctggaaaatggtacagtgatgctgaacttcatttttcagaaagagttgttcttcctc
cccctgggatttgcactgaaggcactagttggtttctcagactatcagatttttcaggag
ttgatcaaaggaagagaagacaactccttctataagaactgcatctctcagatgctgaga
atggtaatggaggagggctgtgccacgcaaaagcaggtccttaactacatcgggaaatgc
ttccgagtgaaactcaaccttcctgagtggtacccaaatgagcaagctgcagaattcctt
ttggatcagtgcatctgtatccacttgaaaaccaaaactgagaagttctacttgctttgt
ctgatgacccggaagctgtttgcttttgccaaagaagagtgcatggaggagaatccagac
agccttatgaatcaggaggtgcttaccccagggcagctttacctcatgttcttaaaggag
aggatggaagcttggttgctttctgttaaagtagccttggacaaaagatctcaaaagacc
aatgtaaccatcaattcagaaaatatgatgaagctattcagcatgggaattgatgttaca
aggccatttgaatatctccttgctactggtaacctgcgctctaaaacaggtctgggtatg
ctacaagattctggtctgtgtgtggtggcagacaagctgaattttattcgttacctgtcc
cattttcgctgcgtacacagaggtgctgcgtttgccaagatgagaaccaccacagtgcgc
aaactgctcccagaatcctggggcttcctgtgccctgtgcacacccccgacggagagccc
tgtgggctgatgaaccatattacgactgtctgtgaaatagtgacgcagtcagcctacacc
ttgtccctgccacctttgctctgctccttaggtgtcactcccgttgatgggactccaagc
caaccctatgcagagtgttacccagttacactggatggctcgttagtgggctgggtagaa
aaagatatggctcctacgattgcagatactctccggcactttaaggtaatgcaagaaaag
aaaattccagcttggactgaggtagtccttattccaatgaccggaaaacctagtctgtat
ccaggattattcatttttactaccccttgcaggatggttcggcctgtgagaaatttggcc
ttgggaaaggaagaattgattggtactctggaacaggtcttcatgaacattgctgtcctt
gaggatgaaattgtgcctggcgtgaccactcaccaggagctctttcctcatagcatgttg
agtgtggtagccaacttcattccattctctgatcacaaccagagtcccagaaacatgtac
caatgccagatgggcaagcaaactatgggctttccacttctgacttatcaggatcgctca
gataataaactgtaccgacttcagaccccgcaaagccccttggtgcggccgtccatgtac
gattactatgacatggacaattatccagtcggtaccaatgcaatcgttgctgtcatctcc
tacactggctatgacatggaagatgcaatgattgtaagtaaggcttcatgggagagagga
tttgcccacggcagcgtttacaagacggagagcatagatcttgctgaaaaaatcaaacaa
gtagatgacagtctggtgtttggagtcaagcctggtgatccaagggttatacagaatctg
gacgctgacggactgccgcacattggatccatactgcagtatggggacccttactacagc
tacctgaacctcagtactggggagagcttcataacctattacaagagtaaggaaagttgc
attgtggataacatcaaagtgtgcagcaatgacagtggaaatggaaaatttaaaagtgtt
tgcatcactatgagaatccctcgtaatccaactattggggacaaatttgccagccgacat
ggacagaagggtattttgagcagactctggccagttgaggacatgccatttacagagagt
ggaatggttccagatattctcttcaatcctcatggctttccatcccgaatgaccattgga
atgctgattgagagcatggcagggaagtctgcagcattgcatggcctctgtcacgatgcc
acccccttcacgttttcggaggagaactctgccttggaatactttggcaagatgttgaag
gctgctggctataactactatggaacagagaggatgtacagtggaatcagtggggtggaa
ctggaggcagacatttttattggagttgtatactatcaacgcctgcgtcacatggtttcg
gacaagttccaagtgaggacgacaggagccagggataaagtcaccaaccagcccatcggg
gggaggaatgtccagggtgggattcgcttcggagagatggaacgcgatgccttgttggct
cacggcacgtccttcttgctgcatgaccgtctcttcaactgttccgatcgttctgtggcc
cacgtctgtgtcaagtgtggcagtttgctctctcctttgttggagaagcctccgccttcc
tggtccacgacacgcaataggaaataccactgtactgtgtgcaatcagagcgacacaatc
gacactgtttctgtgccttatgtcttccggtattttgtggctgagttggcagccatgaac
ataaaagtgaaactcgatgtgaactaa
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integrated database retrieval system
