Trachemys scripta elegans (red-eared slider): 117878027
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Entry
117878027 CDS
T07347
Symbol
NFKB1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04010
MAPK signaling pathway
tst04210
Apoptosis
tst04218
Cellular senescence
tst04620
Toll-like receptor signaling pathway
tst04621
NOD-like receptor signaling pathway
tst04622
RIG-I-like receptor signaling pathway
tst04623
Cytosolic DNA-sensing pathway
tst04625
C-type lectin receptor signaling pathway
tst04920
Adipocytokine signaling pathway
tst05132
Salmonella infection
tst05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117878027 (NFKB1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
117878027 (NFKB1)
04218 Cellular senescence
117878027 (NFKB1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
117878027 (NFKB1)
04621 NOD-like receptor signaling pathway
117878027 (NFKB1)
04622 RIG-I-like receptor signaling pathway
117878027 (NFKB1)
04623 Cytosolic DNA-sensing pathway
117878027 (NFKB1)
04625 C-type lectin receptor signaling pathway
117878027 (NFKB1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
117878027 (NFKB1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117878027 (NFKB1)
09171 Infectious disease: bacterial
05132 Salmonella infection
117878027 (NFKB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117878027 (NFKB1)
Transcription factors [BR:
tst03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
117878027 (NFKB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
Ank_2
RHD_dimer
Ank
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
117878027
NCBI-ProteinID:
XP_034627765
LinkDB
All DBs
Position
5:28054642..28134067
Genome browser
AA seq
977 aa
AA seq
DB search
MAEEDAYIMGVSDHQMFAMEQFMGVNALFNNTGFITSELPLRTDGPYLQIIEQPKQRGFR
FRYVCEGPSHGGLPGASSEKNKKSYPQVKIFNYVGSAKVIVQLVTNGKNVHLHAHSLVGK
YCEEGVCTVNAGPKDMVVGFPNLGILHVTKKKVFETLEARMTDACKKGYNPGLLVHPELN
YIQAEGGGERQLTEREREIIRQAALQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLDPVIS
DAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEDENGGVWEG
FGDFSPTDVHRQFAIVFKTPKYRDVNITKPASVFVQLRRKSDLETSEPKPFLYYPEIKDK
EEVQRKRQKLMPNFSDGYGGGSGAGGGGGGMYGGGGSGAGSGYGYPSYGYSAYGGMPFHP
GTTKSNAGMKHGISNDMAEQDGESCNKHDDKPDMKHNTTVEITERRESRVCSGDNKEEDV
TLSCTAEADCRLQDDLFLEKAMQLAKRHANALFDYAVTGDVKMLLAVQRHLTAVQDENGD
NVLHLAIIHLHSDLVRNLLDVVLDFNSDDIINMRNDLYQAPLHLAVITKQADVVEDLLRA
GADVSLLDRHGNSILHLAAKEGDDKILNILLKYEKTSPMINHSNGEGLNVIHMAVMANSM
PCLRQMIAAGADVNAQEQKSGRTALHLAVEQENISLAGCLLLEGDADVDSTTYDGTTPLH
IAAGRGSTKLTALLKAAGANPYIENFEPLFDLEDVRDKDSEDEGIVPGTTPLDMASSWEV
FDILNGKPYESKLASDDLLMQGDMKKLNEDSKQQLYKLLEVPDPNKNWCTLAQKLGLGIL
SNAFRLSPTPAKTLLDNYEVSGGTVKELVDALRLMDYTEAIEIIQKVLSIPLNQSSNEDN
AVKAPPLSPSAFSTKEETGELYNVKLQDNESMCDSGVETSFRRLSFTYSESLNSKSSITL
SKMALGYGQEGSVQGKM
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagaagatgcctatatcatgggagtatctgatcatcaaatgtttgcaatggaa
cagttcatgggagtgaatgcactatttaataatacaggtttcattacctcagagttacca
ctacgaacagatggaccataccttcaaatcatagaacagcctaaacagagggggtttcgt
ttcagatatgtgtgtgaagggccatcacatggtggacttccgggtgcttctagtgaaaag
aacaaaaaatcataccctcaggtcaaaatcttcaattatgttgggtctgcaaaagtaatt
gtccagttagtcactaatggaaaaaatgtccacctgcatgcccacagcttggtgggtaaa
tattgtgaggaaggagtatgcacagttaatgcaggacctaaggatatggtagtagggttt
ccaaacctagggatacttcatgtcacaaagaagaaagtgtttgaaactctggaagcacga
atgacagatgcctgtaaaaaaggatacaatcctgggctcctagtgcatcctgaactcaac
tatatacaagcagaaggtggtggagagagacaactaacagagcgggaaagagaaatcatc
cgtcaggcagcccttcagcagactaaagagatggacctcagcgtggtgcgactcatgttc
acagccttcctccccgacagcactggcagcttcacaagaagacttgatcctgtcatatca
gatgcaatatatgacagcaaagcccccaatgcatccaatttaaagattgtaagaatggac
agaacagcaggatgtgtgacaggaggagaggaaatttaccttctttgtgacaaggttcag
aaagatgatattcagattcgtttttatgaagaggatgaaaatggtggcgtatgggaaggc
tttggagatttttctcctacagatgtacataggcagtttgctattgtattcaaaactccg
aagtacagagatgtcaatatcacaaaaccagcatctgtttttgtccaactgcggcggaaa
tctgatctggaaacaagtgagccaaagccatttctgtactacccagaaatcaaagataaa
gaagaagttcagaggaagcgacagaagcttatgcctaatttttctgatggttacggtgga
ggcagtggtgccggaggtggagggggtggaatgtatggaggcggaggaagtggtgctggc
tcagggtacggttatccctcctatgggtattctgcttatggaggcatgcctttccaccca
ggcaccacaaagtctaatgctggaatgaaacacggaatttcaaatgatatggctgaacag
gatggagaaagctgtaataagcacgacgacaaaccagatatgaaacataacacgacagtg
gaaatcacagagaggagggagtccagagtttgtagtggtgataataaggaggaggatgtt
actttgtcatgtacagctgaagcagattgtaggttacaggatgatctgttcctggagaag
gcaatgcagcttgctaaacgtcatgccaatgctctttttgactatgctgtaactggtgat
gtgaagatgctacttgctgttcagcgacatcttactgccgtccaggatgaaaatggtgac
aatgtccttcacttagcaattatccaccttcattctgacctggtgagaaacctcttagac
gtggtgctggattttaattctgatgacatcatcaatatgagaaatgacctatatcaggca
ccattgcacttggcagttatcacaaagcaggcagatgtggtagaggacttgctaagggct
ggagctgatgtcagccttctggatcgacatggcaattctatcttgcatctagctgccaaa
gaaggagatgacaagattttaaatatactccttaagtatgagaagacatctccaatgatc
aaccattcaaatggggaaggtctcaatgtgattcacatggcagtgatggcaaatagcatg
ccttgtctcagacagatgattgctgctggagctgacgtcaatgctcaggaacaaaagtcc
gggcgaactgcgttgcatctggctgtcgaacaagagaacatctctttggcaggctgcctt
ctccttgagggtgatgcagatgttgacagtactacatacgatgggacaactccacttcac
atagcagctggaagggggtctacaaaactgactgctcttctcaaagcagcaggtgcaaat
ccttatattgagaactttgagccattgtttgacctagaagatgtgagagacaaagacagt
gaagatgaaggaatcgtacctggaacgacacctttggatatggcctccagttgggaggta
tttgacatattaaatggcaaaccttatgaatcaaaattggcttctgatgacttactgatg
caaggagatatgaaaaaattgaatgaagactccaagcagcagctttacaagttactagaa
gtaccagatccaaacaaaaactggtgtacactggcacaaaaattgggtctgggaatactt
agtaatgccttcaggttgagtcctaccccagccaaaactctgctggataactatgaggtt
tctggtggtacagtgaaagagttggtcgatgcgttgagactaatggattacacagaagca
attgaaataattcagaaagtgctctccatcccattaaaccagtctagcaatgaggataat
gctgtgaaggctccgccattgtcaccatctgccttctccaccaaagaagagacgggtgaa
ctttataatgtaaaattgcaagacaatgaaagcatgtgcgatagtggcgtggagacctcc
ttccgcagacttagcttcacttattctgagtccctgaacagcaagtcatcgataacactt
agcaaaatggccctgggatatggacaagaaggctcagttcaaggcaaaatgtaa
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