Trachemys scripta elegans (red-eared slider): 117884840
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Entry
117884840 CDS
T07347
Name
(RefSeq) sodium channel protein type 2 subunit alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tst04040
]
117884840
Ion channels [BR:
tst04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117884840
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
PKD_channel
GPHH
IQCJ-SCHIP1
ATP-synt_B
IQ
Neur_chan_memb
K_channel_TID
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
117884840
NCBI-ProteinID:
XP_034641588
LinkDB
All DBs
Position
11:33728570..33856183
Genome browser
AA seq
2007 aa
AA seq
DB search
MAQSVLVPPGPDSFHYFTRESLAAIEQRIAEEKAKKSKKERKDDDDENGPKPNSDLEAGK
TLPFIYGDIPPGMVSEPLEDLDPYYINKKTFIVLNRGKAIFRFSAASAVYMLTPFNPLRK
IAIKILVHSLFSMLIMCTILTNCVFMTMSNPPEWTKNVEYTFTGIYTFESLVKILARGFC
LEDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCLQWPPDNSTLEINVISYFNSTM
GENGTFVNTTVSTFNWEEYIEDRSHFYFLEGQNDALLCGNSSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATMEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAAVAADSREFSGVGG
VGGFSESSSEASKLSSKSAKERRNRRKKRKQKEQSEGEEKDEEDFHKSGSEDSIRRKGFR
FSIEGNRLTYEKRFSSPHQSLLSIRGSLFSPRRSSRTSLFSFRGRAKDVGSENDFADDEH
STFEDNESRRGSLFVPHRHGERRNSNISQASRSSRMVPVLPANGKMHSTVDCNGVVSLVG
GPPALTSPGQLLPEGTTTETELRKRRTSSYHVSMDFLAEPSARQRAMSLASILTNTMEEL
EESRQKCPPCWYRFANTCLIWDCCTQWLKVKHIVNLIVMDPFVDLAITICIVLNTLFMAM
EHYPMTEQFSHVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDSIIVSLSLMEL
GLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVV
GMQLFGKSYKECVCKISNDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAM
CLIVFMMVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVARIQKGIDYVK
RKAHEFIQKAFVRKQKALDEIKPLEDLNNKKDSCISNHTVIEIGKDLNYLKDRNGTTSGV
GSSVEKYVVDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESDLEESKEKLNAS
SSSEGSTVDIGLPQEGEQPEIEPEEALEPEACFTEGCVRKFKCCQVSIEDRKGKIWWNLR
KTCYKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFILEML
LKWVAYGFQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALS
RFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCVNTTNDERFDIS
QINNYSQCEDLINNNETARWKNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSRNVL
DQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYY
NAMKKLGSKKPQKPIPRPANKFQGMVFDFVTKQVFDISIMILICLNMVTMMVETDDQSDE
MQNNLWWINLVFIVLFTGECILKLISLRYYYFTIGWNIFDFVVVILSIVGMFLADLIEKY
FVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFG
MSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGEPDCDPYKDHP
GSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMF
YEVWEKFDPDATQFIEFSKLSDFAASLDPPLLLAKPNKVQLIAMDLPMVSGDRIHCLDIL
FAFTKRVLGESGEMDTLRIQMEDRFMAANPSKVSYEPITTTLKRKQEEVSAVIIQRAFRR
YLLKQKLKKVSSMFNQDKDKDEDDLPIKEDMIIDKLNENSTPEKTDMTPSTTSPPSYDSV
TKPDKEKYEKDKSEKEDKGKDIREGKK
NT seq
6024 nt
NT seq
+upstream
nt +downstream
nt
atggcacaatcagtgctggtaccaccaggacctgacagcttccactatttcacaagagag
tcacttgcagctatcgaacaacgtattgctgaagaaaaagctaagaagtctaaaaaagaa
cgtaaagatgatgatgatgaaaatggaccaaaaccaaatagtgatctggaggcaggaaag
acactgccatttatttacggcgacatacctccaggaatggtgtccgagcccttggaggat
ctggacccatattatatcaataaaaaaacttttatagtattgaatagagggaaggcaatc
ttccgattcagtgctgcctctgccgtgtacatgttaactcccttcaatcctcttagaaaa
atagctattaaaattttggtacattcattgttcagcatgcttattatgtgcactattttg
accaactgtgtatttatgaccatgagtaaccctccggagtggacaaagaatgtagaatac
acattcactggaatttatacctttgaatcacttgtaaaaattcttgcaaggggcttctgt
ttagaagattttacttttcttcgagacccatggaattggctagatttcactgtcattaca
ttcgcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcaga
gttctccgagcattgaaaacaatatcagtcattccaggcttaaaaactatcgtgggagcc
ctcattcagtctgtgaagaagctctcagatgtaatgatcctgactgtgttttgtctgagt
gtatttgcactaatagggctgcagctgttcatgggcaacttgaggcacaaatgcttgcag
tggcctccagacaattctactttggaaataaatgttatttcctactttaatagcacaatg
ggcgaaaatggaacatttgttaatacaacagtgagcacatttaattgggaggagtacatc
gaggatagaagtcatttttactttttggaaggtcaaaatgatgctctgctgtgtggcaat
agttcagatgcaggtcaatgtccagaaggatatatatgtgtaaaagctggtagaaacccc
aactatggctacacaagctttgacacattcagctgggcatttttgtcactctttcgactg
atgactcaggacttttgggagaatctttatcagctgacgctacgggctgctggcaaaaca
tacatgatatttttcgttctggtgattttcctgggctctttctatctgattaacttgatc
ctggctgtggttgccatggcctatgaagaacagaatcaagcaaccatggaagaagcagag
cagaaggaggcagaatttcagcagatgcttgaacagctgaaaaaacaacaagaagaagct
caggcagcagcagcagcggcagtagcagctgattcaagagagttcagcggagtaggtggg
gtaggagggttctctgaaagttcttctgaagcatcgaagttgagttcaaagagtgctaaa
gagagaaggaacagaaggaagaagagaaaacagaaggagcagtctgaaggagaggagaaa
gatgaggaagattttcacaaatctggatcagaagatagcatcagaaggaaaggtttccga
ttctccattgaagggaacaggctgacatatgaaaagaggttctcttctccacatcagtct
ttgctgagcattcgtggctccctgttttccccaaggcgcagcagcagaacgagtcttttc
agcttccgaggtcgagcaaaggatgtaggatcagaaaatgactttgcggatgatgaacat
agcacttttgaagacaatgagagtagaagaggttctctctttgttccacatagacatggt
gaacggcgcaacagtaacattagtcaggccagtaggtcatccaggatggtaccagtgctt
ccagcaaatgggaaaatgcacagcactgtagattgcaatggagtggtttctttagttggt
ggacctccggctctcacgtcacctggacagcttctcccagagggcaccacaacagaaaca
gaattaagaaagagacggacaagttcttaccatgtttctatggatttcctggcagagccc
agtgcaaggcaaagagcaatgagtttagccagcatactcacaaacacaatggaagaactt
gaagaatccaggcagaaatgcccaccatgctggtatagatttgctaacacatgcttgatc
tgggattgctgcactcaatggttaaaagtaaaacatattgtaaatttgattgtgatggat
ccatttgtcgatcttgctattactatctgcattgttttaaacacattgtttatggccatg
gagcattatccaatgacggaacagtttagtcacgtgctttcagtaggaaatctggtcttt
actgggatcttcacagcagaaatgtttctgaagataattgccatggatccttattattat
ttccaagaaggctggaatatttttgatagtattattgtgagcctcagtttaatggagctt
ggtcttgcaaatgtggaaggattatctgttctcagatcattcagattgcttcgagttttc
aagttggcaaaatcttggccaacactgaatatgctgataaagattattggtaactcagtg
ggggctttgggaaatttgaccttggtgctggccatcattgtcttcatttttgctgtggtt
ggtatgcagctgtttggtaaaagctacaaggaatgtgtctgcaagatctccaatgactgt
gaacttccacgctggcacatgcatgacttcttccactctttcttgattgtgttccgagta
ctatgtggagaatggatagagactatgtgggattgtatggaggttgcggggcaagccatg
tgccttattgttttcatgatggtcatggtgattggaaacctagtggtactcaacctcttt
ctggccttactgctgagctcatttagttcagacaaccttgcggctacagatgatgataat
gaaatgaacaatctccaaattgcagtggcaaggattcagaagggaatagattatgtgaaa
agaaaagcacatgaattcatccaaaaagcctttgttagaaaacagaaagctttagatgaa
atcaagcctcttgaagatctaaacaacaaaaaagacagctgtatttccaaccatactgtc
atagaaataggtaaagaccttaactatcttaaggataggaatggaactaccagtggcgta
ggcagcagcgtggaaaaatatgtcgtcgatgaaagtgattacatgtcattcataaacaat
ccaagcctcactgtgacagtaccaattgctgttggggaatctgattttgaaaatttaaat
acagaagagtttagcagcgagtcagatctagaggaaagcaaagagaagctaaatgcatcc
agctcatctgaaggtagtacagttgatattggacttcctcaagaaggagaacagccagag
atagaacccgaagaagctcttgaaccagaagcctgttttacagaaggctgtgtacggaag
ttcaagtgctgtcaagtcagcatagaagatcggaaaggaaaaatatggtggaatcttagg
aaaacctgctacaagatagttgaacacaactggtttgagaccttcattgtcttcatgatt
ctcctcagcagtggtgctctggcttttgaagatatatacattgaacagcgcaagactatc
aagaccatgctggaatatgctgataaggtcttcacttacatcttcattttggaaatgctt
ctaaaatgggttgcttatggttttcaaacctatttcactaatgcctggtgctggctggac
ttcctgatcgttgatgtctctttggttagcttaacagctaatgccttgggctactcagaa
cttggtgcgattaaatcccttaggacattaagagctttgagacctctaagagccttgtca
cgatttgaagggatgagggtcgttgtgaatgccctcttaggagcaattccatccattatg
aatgtgcttcttgtttgtcttatattctggctaatcttcagcatcatgggagtaaatctg
tttgctggcaaattctactactgtgttaataccacaaatgatgagagatttgatatcagc
caaatcaacaattatagtcaatgtgaggacctcataaacaacaatgaaactgccagatgg
aaaaacgttaaagtaaactttgataatgtaggacttggctatctttctctgcttcaagta
gccacatttaaaggatggatggatataatgtatgcagctgtggattctcgaaatgtattg
gatcagcctaagtatgaggacaacctgtacatgtatctttactttgtcatctttatcatc
tttggatcattctttaccctgaatcttttcattggtgtcatcatagataatttcaaccag
caaaaaaagaagtttggaggccaagacatctttatgacggaggaacagaagaaatattac
aatgcaatgaaaaagctgggttcaaagaaaccacaaaaacctatacctaggccagcgaac
aaattccaaggcatggtctttgattttgtgacaaaacaagtatttgacatcagcatcatg
attcttatctgccttaacatggtcaccatgatggtagaaacagacgaccagagtgatgag
atgcaaaataatttatggtggattaaccttgtgttcattgtccttttcactggagaatgt
attctgaaactgatttcacttcgttattactatttcaccataggctggaacatttttgat
tttgtagttgtcattctctccatagtaggtatgtttctagctgacctgattgaaaaatat
tttgtgtcccccaccttgttcagagttatccgactcgccagaataggtcgaatcctgcgt
ctcattaagggtgctaaagggatccgcactctgctttttgctttgatgatgtctcttcct
gctttgtttaacattggtctcctgcttttcctggtcatgtttatctatgctatatttgga
atgtccaactttgcctacgttaagagggaagttggtattgatgacatgttcaactttgaa
acttttggcaacagtatgatctgcctatttcaaattaccacgtcagctggttgggatggt
ttgttagcaccaattctgaacagtggagaaccagactgtgacccttacaaagatcaccca
ggaagctcggttaaaggagactgtggtaacccttcagttgggattttcttttttgtcagt
tatattatcatctcatttctagttgtagtaaacatgtatattgctgttattttggagaac
ttcagtgttgctacagaagaaagtgccgagcccttgagtgaggacgactttgagatgttc
tatgaggtttgggaaaagtttgatccagacgccacccagttcatagagttcagtaaactg
tctgattttgcagcttcactggatcctcctcttcttttagcaaaaccaaacaaagttcag
cttattgcaatggatctgcccatggtgagtggtgacagaattcactgccttgacatcttg
tttgcttttacaaagcgtgttttgggggaaagtggagaaatggatacacttcgaatacaa
atggaagatcggtttatggcagcaaatccttctaaagtttcctatgaaccgattacaacc
acattaaaacgaaaacaagaggaagtatctgctgtcattattcagcgagctttcagacgt
taccttttaaagcaaaaacttaaaaaagtttcaagtatgtttaaccaagataaagataaa
gatgaggatgacctgcctatcaaagaagatatgattatagataagctaaatgagaactcc
actccagaaaaaacagatatgaccccttccacaacctctccaccttcctatgatagcgta
acaaagccagacaaagagaaatatgaaaaagacaaatcagaaaaagaagacaaaggtaaa
gacatcagggaaggtaaaaagtga
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