Trachemys scripta elegans (red-eared slider): 117889463
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Entry
117889463 CDS
T07347
Symbol
GRIN1
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1 isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04020
Calcium signaling pathway
tst04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
117889463 (GRIN1)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
117889463 (GRIN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tst04040
]
117889463 (GRIN1)
Ion channels [BR:
tst04040
]
Ligand-gated channels
Glutamate (ionotropic)
117889463 (GRIN1)
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GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
DUF6724
Rap-GAP_dimer
Motif
Other DBs
NCBI-GeneID:
117889463
NCBI-ProteinID:
XP_034649592
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Position
17:complement(2227067..2295704)
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AA seq
963 aa
AA seq
DB search
MSTMRLLLLAALVSFSFARAGCEPKIVNIGAVLSTKKHEQIFREAVSQANKRHGTWKIQL
NATSVTHKPNAIQMALSVCEDLISSQVYAILVSHPPAPNDHLTPTPVSYTAGFYRIPVIG
LTTRMSIYSDKSIHLSFLRTVPPYSHQSNVWFEMMRVYNWNHIILIVSDDHEGRAAQKKL
ETLLEERESKSKKRNYENLDQLSYDNKRGPKAEKVLQFDPGTKNVTSLLLEAKELEARVI
ILSASEDDAATVYRSAAMLNMTGSGYVWLVGEREISGNALRYAPDGVIGLQLINGKNESA
HISDAVAVVAQAVHDLFEKENITDPPRGCVGNTNIWKTGPLFKRVLMSCKYTEGVTGRVE
FNEDGDRKFANYSIMNLQNRKLVQVGVYNGSHVLPNDRKIIWPGGETEKPAGYQMSTKLK
IVTIHQEPFVYVKATQADGTCKEEITINGDPVKKVFCTGPNETIPGRPTVSLCCYGFCID
LLIRLAGVMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINN
ERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLD
RFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAM
IIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELST
MYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIG
MRKDSPWKQNVSLAILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVA
GGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQSSLSLVALGFSFRKGPEH
FFLVDRKSGRAEPDPKKKATFRSITSTLASSFKRRRSSKDTQYHPTDITGQLNLSDPSVS
TVV
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccatgcgcctgctgctgctcgccgcgctcgtctccttctccttcgcccgcgcc
ggctgcgagcccaagatcgtcaacatcggcgccgtgctgagcaccaagaagcacgagcag
atcttccgcgaggcggtgagccaggccaacaagcgccacggcacgtggaagatccagctg
aacgccacctcggtcacccacaagcccaacgccatccagatggccctgtccgtctgcgag
gacctcatctccagccaggtctatgcaatattagttagtcacccacctgctccaaatgat
cacctaacaccaacacctgtatcatacacagctggcttctacaggattcctgtcattggt
ctgacaacacgcatgtctatatattctgataagagcatccacctgtccttcctgcgcact
gtcccaccgtactctcaccagtccaatgtctggtttgagatgatgcgagtgtacaactgg
aatcacatcatactaatagtcagtgatgaccacgagggtcgcgctgcacagaagaagctg
gagacgctcctggaagagagagaatccaagagtaaaaaaaggaactatgaaaacctcgac
caactttcctatgacaacaagcgaggacccaaggctgagaaagttcttcagtttgaccct
ggaaccaaaaacgtgacttcgctgctgcttgaggcgaaggagctggaggctcgggttatc
atcctttctgcaagtgaggatgacgccgccacagtgtacagatcggcagccatgctcaat
atgacgggctccggatacgtgtggctggtgggggagagagagatatctggcaatgccctg
cgatacgcccctgacggggtgattggtttgcagctcattaacgggaagaacgagtcagct
cacatcagcgatgctgtcgcagtggtagctcaggcagtgcatgacttattcgagaaggag
aatatcacggaccccccgagaggctgcgttgggaacaccaacatctggaagactggccct
cttttcaagagagtgttgatgtcgtgcaagtacaccgagggcgtgaccgggagagtggag
ttcaatgaagatggggacaggaaattcgccaattacagcatcatgaacctgcagaaccgg
aaactggttcaagttggggtttacaatggcagccatgtcctgcccaatgaccggaagatc
atctggccggggggagagacagagaaacctgcgggctatcaaatgtcaaccaaattgaag
attgtgacaattcaccaagagccctttgtgtacgtgaaagcaacacaagctgatggaaca
tgtaaggaagaaattaccatcaatggagaccccgtgaaaaaggtcttttgcactggaccc
aatgagactatcccaggccgccccaccgtgtcgctgtgctgctacggcttctgcatcgac
ctgctgatcagacttgcaggggtgatgaacttcacctacgaagttcacctggttgctgat
ggtaaatttggcacacaggagcgggtcaataacagcaataagaaggagtggaacgggatg
atgggggagctcctgagcggccaggcagacatgatcgtggcccccctcaccatcaacaat
gagcgtgcgcagtacatcgaattctccaagcccttcaagtaccagggtctcaccatcctg
gtgaagaaggaaatcccccgcagcaccctcgattcgttcatgcagcctttccagagcacg
ctgtggctgctggtgggactctcggtgcatgtggtggccgtgatgttatatctcttagac
cggttcagcccgtttggccggttcaaagtgaacagtgaggaagaggaggaagacgcactg
accctctcctcggccatgtggttctcttggggagtgctgctgaactctgggatcggagaa
ggtgctccccggagcttctctgctcgtatccttggcatggtgtgggctggctttgctatg
atcattgtggcttcctacactgccaacctggctgccttcctggtgttagacagacctgaa
gagagaatcacaggcattaacgacccaaggctgcggaacccctccgataagttcatctac
gccacggtgaagcagagctcggtggacatttacttccggcggcaggtggagctgagcacc
atgtaccggcacatggagaagcacaactacgagagcgctgccgaagccatccaggccgtc
agggacaacaagctccacgccttcatctgggactcggcagtgctggagttcgaagcctcc
cagaagtgtgatctggtgacaacaggggagcttttcttccgctctggctttgggattggg
atgcgcaaagacagcccctggaagcagaacgtctccctggccatcctcaaatcccacgag
aacggcttcatggaggatttggacaagacttgggtgaggtatcaggagtgtgattcccgt
agcaatgccccagcaacactcacctttgaaaatatggcaggtgtatttatgctggtggct
ggaggtattgttgccgggatatttttaatattcatagaaatagcttacaaaaggcataag
gatgcgcggaggaagcagatgcagctggcgtttgcggccgttaatgtgtggcggaaaaac
ctgcagtcctctctctctcttgtggcgctaggattcagcttcagaaaaggcccagagcat
ttttttttagtggatagaaaaagtggtagagcagaacctgaccctaaaaagaaagccact
tttaggtccatcacctccaccctggcctccagcttcaagagacgtaggtcctccaaagat
acgcagtatcatcccactgacatcaccgggcaactcaacctctccgacccctcagtcagc
actgtggtgtga
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