Triticum urartu (red wild einkorn wheat): 125524854
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Entry
125524854 CDS
T08232
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tua
Triticum urartu (red wild einkorn wheat)
Pathway
tua03020
RNA polymerase
tua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tua00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125524854
09124 Replication and repair
03420 Nucleotide excision repair
125524854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tua03021
]
125524854
03400 DNA repair and recombination proteins [BR:
tua03400
]
125524854
Enzymes [BR:
tua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125524854
Transcription machinery [BR:
tua03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125524854
DNA repair and recombination proteins [BR:
tua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125524854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
125524854
NCBI-ProteinID:
XP_048545837
LinkDB
All DBs
Position
7:complement(408471611..408480248)
Genome browser
AA seq
1859 aa
AA seq
DB search
MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVVIEHAETMERGKAKPGGLSDPRLGTI
DRKIKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK
FKQALKIRNPKNRLRRIYDACKSKKICAGGDELEVQDQQDADEPVKKRGGCGAQQPNITV
DGMKMVAEFKATKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIT
EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILRPRPIWTGKQVFNLIIPKLIN
LIRFSAWHAETESGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKNL
EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRNVFEAEVQKLEADRLQ
LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVP
GDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK
PEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRIT
NDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKVNKFDESEGFKP
DNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY
LRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEGLDYGMTPARSPMSATP
YRDGGMMSPMLSPNFRASPITDAQFSPYVGGMAFSPVPSNYSPSSGGGYSPSSPVFSPGP
GHGYSPTSPSYSPASPSYSPTSPSYTPGSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS
PTSPNYSPTSPSYNPSSAKYSPSHAYSPSSPRMMSPYSQTSPNYSPTSPTYSPTSPSYAQ
PSPSYSPTSPHTTSGGPSPDYSPTSPNYSPSASYSPTAPGYSPSSTGPQTTDKDDETVD
NT seq
5580 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgaggttcccgtactcgccggctgaggtggccaaggtgcagctcgtgcagttc
ggcatcctcagcccggatgaaatcagacaaatgtcagtggtggtgatagagcatgcagag
actatggagagggggaaggcaaagcctgggggtttgagtgaccctcgtttgggcactatt
gaccgaaagatcaagtgtgatacatgtatggctgggatggctgagtgcccgggtcacttt
ggccaccttgagcttgcaaagccaatgttccacatcggcttcatcaagactgtactctcc
ataatgcgctgtgtgtgcttcaactgttccaagatcctggcggatgaggacgataccaag
ttcaagcaggctctgaaaatcaggaacccaaaaaatagattaagaagaatatatgatgct
tgcaagagcaaaaagatttgtgctgggggtgatgaacttgaggttcaagatcagcaggat
gctgatgagccagtgaagaaaagaggtggttgtggtgctcagcagccaaatatcacagtt
gatggtatgaagatggttgctgaatttaaagcaacaaagaagaaaagtgatgatcaagat
caactccctgaaccagtggagcgaaagcaaattctctctgccgagagggtccttaatgtt
ctcaagcgtataagtgatgaggactgtcttttgttgggcctgaaccctaagtttgctcgt
cctgattggatgatactgcaagtccttccaattcctccaccgcctgtcagaccatctgtt
atgatggatacttcctccagaagtgaggatgatttgactcatcaattagcgatgataatt
cgacataatgagaatttgaggaggcaagagagaaatggagccccagctcacattataact
gagtttgctcagttgttgcagtttcacattgcaacgtacttcgataatgatcttcctgga
caaccaagggccactcagcgttctggaaggcctattaagtcaatatgcagcaggctgaaa
gcaaaagaaggccggattagaggaaacttaatggggaagcgtgttgatttctcagctcgt
actgtcatcacacccgatccgaatatcaacattgatcaattgggggtgccatggagtatt
gctttgaatctgacatacccagaaactgtcactccatataacatcgagaggttgaaagag
ctagtagaatatgggcctcacccacccccaggtaagacaggtgcaaagtacatcatcagg
gaagatggtcagaggctggatcttcgctatgtgaagaaaagtagtgatcagcatttggag
ctgggttacaaggtggaaagacacctcaatgatggagattttgttcttttcaaccggcaa
ccaagtcttcataaaatgtctatcatggggcatcgtattaaaattatgccgtactcaact
ttccgcctgaacctgtctgtcacatcaccatacaatgcagattttgatggggatgaaatg
aatatgcatgttcctcagtcatttgagacaagagctgaagttttagagttgatgatggtg
ccaaaatgtattgtctcgcctcaagcgaatagacctgttatgggtattgtccaggacaca
cttcttgggtgtcgaaaaataaccaaaagggacactcttattgaaaaggatgtatttatg
aacatactaatgtggtgggaagattttgatgggaaggtccctgcacctgccattttgaga
ccaagaccgatttggactggcaaacaagttttcaacttgattattcccaagctaatcaat
ttaataagattttcagcctggcatgctgaaacagaaagtggatttattactccaggagat
actatggtccggatagagaagggagagcttctgtctggtacactttgcaaaaaaacactt
gggacgtcaactggaagtcttattcatgttatttgggaagaggtagggccagatgctgca
cggaagttcttgggtcatacacagtggctggtcaactactggcttctgcaaaacggtttc
agtattggtattggagatacaattgcagatgctgctactatggagaagattaacgagaca
attggaacagctaagaatgaggtgaaggagcttattaagcaagcacaagagaagaacttg
gaacctgagccaggacgcaccatgatggaatcattcgaaaaccgagtaaatcaggttctt
aacaaggctcgtgatgatgctgggagtagtgctcagaagagtttgtctgagagcaacaat
ttgaaagctatggtcactgcaggctcaaaaggcagtttcattaatatttcgcaaatgact
gcttgtgtcggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgt
acattgccccacttcacgaaagatgactacggcccagaaagtcgtgggtttgttgagaac
tcttaccttcgaggtctgacaccacaagaatttttcttccatgctatgggtggtagagaa
ggtttgattgatactgctgtgaaaacctccgagacgggatatattcagcggaggctcgtg
aaggctatggaggacattatggtgaaatatgatggtactgtgcgaaattcgctgggtgat
gttattcaattcttgtatggagaagatggcatggatgctgtttggattgaatcacagaaa
ttggactccctgaagatgaaaaaggctgagtttgataatgtatttcgttatgaactcgat
gatgagaactggaggcctacttacatgttgccggaccatgttgatgatttgaagaccatt
cgtgaattcagaaatgtgtttgaggcagaggttcagaaattagaagctgacagattacag
cttgggactgaaattactacaactggcgacaatacatggcctatgcctgtcaacctgaag
cggcttatctggaatgctcagaagactttcaagattgatttaagaagaccttctgacatg
cacccgatggaaattgtggaagcaatagataagctgcaagaaagacttaaggttgtccct
ggtgacgatgccatgagcatcgaggctcagaagaacgctactttgttcttcaatatcctg
cttcgcagcacatttgctagcaagagggtcttgaaagaatacaggcttacaaaggaatcc
ttcgaatgggtcattggtgagattgaatcgagattcctccagtctttggtagctcctggt
gaaatgattggatgtgtggctgcacagtccattggagaaccggcaactcagatgacactg
aatactttccattatgctggtgttagtgctaagaatgttacccttggagttcccaggtta
agagagatcattaatgtcgccaagaagataaagactccatctctgtctgttttcctaaag
cctgaggtaagcaagaaaaaagaattggctaagaatgtgcagtgtgccttggagtacact
acactgcgtagtgtgacccatgccactgagatatggtatgatcctgatcctctaggaacc
attattgaagaggatgtggaatttgtcaggtcatattatgaaatgcctgatgaggatatt
gacccggataagatctctccttggctgctgcgtattgagctgaaccgtgagatgatggtt
gataagaaattgagcatggctgatattgcagagaagatcaatcatgaatttgacgatgac
ttgtcatgcatattcaatgatgataatgcagataagctcatccttcgtgtccgcattaca
aatgacgaagctccaaaaggagaaatacaggatgaatctgctgaggatgacgtcttcctc
aagaagattgagggtaatatgttgactgagatggcccttcgaggcattccagatattaac
aaggtcttcatcaaatacgggaaggtcaataaatttgatgaaagtgagggtttcaaacca
gataacgagtggatgcttgatacagaaggtgtaaacctcttggccgtgatgtgtcatgag
gatgttgattctacaaggacaacaagtaaccatttgattgaagtgattgaggttcttggg
attgaggctgtccgcagatctctcttggatgagctgagggtggttatatcttttgatggg
tcttatgtgaactacaggcatctggccattctctgtgatacgatgacatacagaggtcac
ctgatggctattactaggcatggtataaatcgtaatgacacagggcccctcatgagatgt
tcttttgaagaaacagtggatatcttgcttgatgctgctgtatatgcggaatctgattac
ctgagaggtgtgactgagaacattatgcttggccagcttgctcctattggtacaggaggc
tgtggattgtatctgaatgaccagatgctgcagcaggccattgagcttcaactcccaagc
tatgttgaaggtctggactatggcatgacaccagcgcgttcacccatgtccgcgacaccg
taccgtgatggaggaatgatgtcaccaatgttgagtccaaatttcagggcttccccaatt
acagatgctcagttctcaccatatgttgggggcatggcattctcacccgtcccgtcaaac
tacagcccatcctctggaggtggttacagtccatcttctccggtgttcagcccagggcca
ggacatggttacagtcccacttctccatcatacagccctgcatcgcccagctacagcccc
acctctccatcatatacgcctggctctccttcctacagcccgaccagtccatcatactct
ccgaccagtccatcatactcgccaacatccccgagctacagccccacatctcctagctac
agccccacatctccgagctacagcccaacatcaccaagctatagccccacatctccgagc
tatagtccaacatcaccggtttatagtccgacctcgccagcatacagcccgacatctcct
gcatacagcccgacgtcgccatcttacagcccaacgtcgccatcatacagccccacttct
ccctcgtacagcccaacatcgccctcatacagcccgacatcaccctcatacagccccacg
tcgccctcatacagcccgacatccccgtcatacagccctacctcgccctcatacagccct
acatcgcctgcatacagccctacatcgcctggttacagcccgacgtcaccgagctacagc
cctacttcaccgaactacagccccacttcaccgagctacaatccttcttcggccaagtac
agtccttcacatgcttattctccaagcagcccaaggatgatgagcccgtacagtcagact
tctccgaactacagcccgacctcaccgacctactcgcccacctcaccatcatatgcacaa
ccaagcccgtcatacagccctacaagcccgcacactacctctggaggacctagcccagat
tacagcccgacatctccaaactacagccccagcgcaagctactccccgactgcaccgggc
tactccccgtcctccaccggcccgcagacaactgacaaggacgatgagactgttgactag
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integrated database retrieval system
