Trichomonas vaginalis: TVAG_2v0560240 Help Entry TVAG_2v0560240    CDS       T01022                                  Name (RefSeq) DNA-directed RNA polymerase   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism tva  Trichomonas vaginalis Pathway tva03020   RNA polymerase tva03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:tva00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     TVAG_2v0560240   09124 Replication and repair    03420 Nucleotide excision repair     TVAG_2v0560240  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:tva03021]     TVAG_2v0560240    03400 DNA repair and recombination proteins [BR:tva03400]     TVAG_2v0560240 Enzymes [BR:tva01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      TVAG_2v0560240 Transcription machinery [BR:tva03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      TVAG_2v0560240 DNA repair and recombination proteins [BR:tva03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       TVAG_2v0560240 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_7 Motif Other DBs NCBI-GeneID:  5464583 NCBI-ProteinID:  XP_001580050 UniProt:  A2DKT1 LinkDB All DBs Position II:17216922..17221991 Genome browser AA seq 1661 aa AA seqDB search MANVRQNAIESCLVGSIDFGLFDPEKIEMFGACEITENQMMDKGEYVKGGLSDLRMGTQT RERLCDTCGRNQEDCPGHFGYIRLAEPFFHVGFLPHCYKLLQMVCHKCGRVLCSYSDPEI QYIVTHYKGKNRFLKLFEKIASKSGKCQHSPDLKNPNEPDVCLDERFWELVNGDSHSEHV RVKKPCNAAVPAIEQGKDFLIKLKDVSKTEEDYLSAEVVLRIFENISDQDVRLLGFNPKR SHPKWMILKILPVPPLAVRPQVVSPGQSAPSQDDITHKLSDIIICNKRLRAQRSESSTDT AMKETRTLLQYHITTYMINDKPSIERAVTKSGRPLKVISQRLKGKEGHLRGHLSGKRDDY SARSVISPDPSISIDQVGVPEQLAKILTFPEVVTPTNQKWLESIVMKGHDDLGGANFVIN DHGTRTDLSCCTDLSTITLSPGYIVERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRT FRLNLCDTTPYNADFDGDEMNLHVPQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDA LLGCRLLSKRDTFLTRNQVMNLMMWLPTTKDTILPPPCILKPVQLWSGKQVFSLFLPKIS HNSYSQDANKMDQNSIPLADRHVIIRDGNLLAGILDKKTVARSEGSLIHVVINSYNTNIA KDFLNQTQLIVNNWLEHRGFSIGLIDCVVPDFVLQEVKHEIDDVESKVQATIIKAQDGQL ERMPGMSYMQSFETEVNNLTNEILSKTYKVINAKIRRDNSLSEMLSAGSKGADTNMSQII GVVGQQNMEGKRVKFGFNGRTLPHFQKHEYGLVERGFCKNSYIAGLTPPEFLFHAMGGRT GIIDTACKTSDTGYIQRRLVKSMESHHVAYDGTVRNSQNEIVQFIYGGDGLDATGLETQR LALVTLNDEDFMKKYHLATEDPTFGQVEMDDFVLDEFLKTPNKDKFLKEEENRLREYREI LQKEIFPNGSNTVVVPVNIARIIESSQRQFDINVHVSKSDLNPLDIISRVDECVNSLIVV KGNDNISRTEQENATLLLRIMLYSHLSAKQCIFEYRLNEQAFKYILGSIKDRFYRSIVAP GEMVGTIAGQSIGEPSTQMTLNTFHFAGISAHDVTLGVPRLNELMNLAKHIRTPSVTVEF ERDVAKDEEIVKAVRAQIESASFKKFVIKAEIYYDPNPEETIIEPDTKWINTRIRYGGVE DRELQDLAPWVLRFEINREEMIASNIESISDIVQKIKGMYGDKFFVIGDDDARIIRMQAR LKDEQAEFAMDVKFLRETEQQMYKSFTLKGIPGISRVKINSAAEKMFLNPETHGFDKEKV SCLYTEGTAFREILSLDHVDTVHTITNDIYQVCDVLGIEAARHSLSYEMMLIMENAGAAL NRRHLDLLADTMTQYGVLYPVSRHGINKTPTGTLMRASYEMTNDVFFDAAVFSEIDYMRD VSSNIIAGKPSRAGTGIVEVLINEDLLPMTKGNNGGEDLIGPATPSMMISPVPQGYVSQD NIVTSPFQDMPTNDIVQSPMSPVSPIESPLNGGALSPMLMDAQSPYLYGAENAASPIMTY KQNYSITMPSPSYQGNAQLLNTTITDHAYSPIAAASPLSPQAMGQSMSPLSPAQQYDPTN FSPAGGFSNTRYNPLSPQTRPMTYSPNNDTPYSPTYEPKKK NT seq 4986 nt NT seq  +upstreamnt  +downstreamnt atggcgaacgttcgacaaaacgctatcgaaagttgccttgttgggtccatcgattttggt ctatttgacccagaaaagatagaaatgtttggagcatgcgaaattactgagaaccaaatg atggataaaggtgaatatgttaaaggtggtttatctgatcttcgtatgggtacacaaaca agagaaaggctttgtgatacatgcggccgtaatcaggaagattgccctggtcactttggc tacatcaggcttgccgaaccatttttccacgtcggcttccttcctcattgctacaagctt ttgcagatggtttgccataaatgtggccgtgtactttgcagctatagtgatccagaaatt caatacatcgtcactcattataaaggaaagaaccgcttcttgaaattattcgaaaagatt gcttctaaatccggcaaatgccagcactctccagatctcaagaaccctaacgagccagat gtttgtttagacgaacgtttctgggaacttgttaatggcgattcccatagtgaacatgta cgcgtcaaaaagccatgcaatgccgctgttcctgcaattgagcaaggaaaggacttctta atcaagctgaaagatgtttccaagacagaagaagattatttatccgccgaagttgttctt agaatcttcgagaacatttctgatcaggatgtcagacttctcggcttcaatccaaagcgt tctcatccaaaatggatgattctcaaaattttaccagttcctccacttgctgttcgtcca caagttgtatctccaggccagagtgccccatcacaagatgatatcacccacaaattaagc gatatcatcatttgcaacaagagacttcgtgcacagcgtagcgagtcctctacagataca gccatgaaggagacaagaacactcttacagtaccacattacgacttacatgatcaatgat aagccatccatcgaaagagccgtaacaaagagtggcagaccactcaaagtcatctcacag cgtttgaaaggtaaagaaggtcacttgcgtggtcacctttctggcaaacgtgatgactat tccgctcgttctgttatttcaccagatccttccatttctatcgaccaagtcggtgttcca gagcaactcgctaagatccttacattcccagaagttgttactcctacaaaccagaaatgg ctcgagtcaattgtcatgaaaggacatgatgaccttggtggagccaacttcgtcatcaac gatcacggcacaagaacagatctttcttgctgcactgatctttctacaattactctttca ccaggctatatcgtcgaacgccatcttcgtgatgatgatattgtcattttcaaccgtcag ccatcattgcacaagatgtctatgatgggacacagagctctcatcatgtcaggccgtaca ttccgtctcaatctttgcgatacaacaccatacaacgccgatttcgatggtgatgaaatg aaccttcacgttccacagagtcagactgctcgtacagaggtcagacatatcatggccgtt cccaagcagatcatttctccacaggcaaacaagccagttattggtcttgtgcaggatgct ttacttggctgcagattactctcaaagcgcgatacattccttacaagaaaccaagtcatg aacctcatgatgtggcttccaacgacaaaagacacgattttaccaccaccatgcatcctg aagccagtacagctctggtcaggtaagcaggtcttctccctcttcttgccgaagatttcc cacaactcatactcccaagatgcgaacaaaatggatcagaactccattcctcttgcggac agacacgttatcatcagagatggtaacctcctcgctggtattctcgataagaagaccgtc gctcgttcagaaggttctttaattcacgtcgtcatcaactcatacaacacaaacatcgca aaggacttcctcaaccagacacagctcattgtcaacaactggcttgagcacagaggcttc tccattggtctcatcgactgcgttgttccagatttcgttttgcaagaagtcaaacacgaa attgacgatgtcgaatccaaagtacaggccacaatcatcaaagcacaagacggacagctc gaacgtatgccaggtatgtcttacatgcagtcattcgaaacagaagttaacaaccttaca aacgaaatcttgtccaagacatacaaagtcatcaacgcaaagatccgtagagataactct ctctcggaaatgctttccgctggttctaaaggtgctgacacgaacatgtcacaaattatc ggcgttgtcggtcagcagaacatggaaggtaagcgtgtcaaattcggtttcaacggaaga actcttccacacttccagaaacacgaatacggtctcgtagaacgtggtttctgcaagaat tcatatattgcgggtcttacaccaccagaattcttgttccacgctatgggtggtcgtaca ggtatcattgatacagcgtgcaagacatcagatacaggctacatccagcgtagacttgtc aaatccatggaatcccaccatgttgcatacgatggcacagtcagaaactcacagaatgag attgttcagttcatttacggtggagatggcttagatgcaacaggtttggagacacagagg ttggcattagtcactctaaatgatgaggatttcatgaagaaataccatctcgctacggaa gatccaacattcggtcaagttgaaatggacgatttcgttctcgatgaattccttaagaca ccgaacaaagacaagttcctcaaggaagaagagaacagactcagggagtacagagaaatc cttcagaaggaaatcttccccaacggctcaaacacagtcgttgttcctgtaaacatcgct cgtatcatcgaatcttcacagcgtcagttcgatatcaatgtccacgtctccaaatcagat ctcaaccctctcgatatcatttcccgtgtcgatgaatgcgtcaactctctcattgtcgtc aaaggaaatgataacatctctcgtacagaacaagagaatgcaactcttcttctcaggatc atgctttactcccatctttccgccaaacaatgcatctttgagtacagactcaatgaacaa gccttcaagtacatcttgggttcaatcaaggatagattctacagatctattgttgcacca ggtgaaatggtcggaacaattgccggccaatccattggtgagccatcaacacagatgaca ttgaacacattccacttcgcaggtatctctgcacacgatgttacattgggtgttccacgt cttaacgagctcatgaacctcgcaaagcacattagaactccatctgtaactgtcgaattc gagagagatgttgccaaagatgaagaaatcgttaaagcagttcgtgcacagatcgaatct gcttcattcaagaagttcgtcatcaaggcagagatctactacgatccaaatcctgaggag acaatcatcgagccagatacaaaatggatcaacaccagaattagatacggtggtgttgaa gacagagaactccaagatttggctccatgggttctcagatttgagatcaaccgtgaagaa atgatcgcatcaaacatcgaatccatttccgacattgtccagaagatcaagggaatgtac ggagacaagttcttcgtaatcggtgatgatgatgcacgtatcatcagaatgcaggcgaga ctgaaggatgaacaggcagagttcgctatggatgttaaattcctcagagagacagagcaa cagatgtacaagtccttcactctcaagggtattccaggcatttctcgtgttaaaatcaat tcagccgctgagaagatgttcttgaatccagaaacacacggtttcgataaagaaaaagtc tcctgcctttacacagaaggtactgcattcagagagattctctcactcgatcacgtcgat actgttcatacaatcacaaacgatatctaccaggtttgcgatgtattaggtatcgaagct gccagacactctctttcctacgaaatgatgctcattatggaaaacgccggtgcagctctt aacaggcgtcaccttgatcttcttgcagatacaatgacacaatatggtgttttgtatcct gtttcaagacacggtatcaacaagacaccaacaggaaccttgatgagagcttcctacgaa atgacaaacgatgttttcttcgatgcagctgttttctcagagatagattacatgcgcgat gtatcatcaaacatcatcgcaggaaaaccttctagagcaggaacaggtattgtcgaagtc cttatcaacgaagacttgctcccaatgactaaaggaaacaacggaggagaagatctcatt ggcccagcaacgccatctatgatgatttctccagttcctcaaggttacgtttcccaggac aatatcgttacatctccattccaggatatgccgacaaacgatattgttcagtctccaatg agccctgtttctccaatagagtctcctctaaacggtggagcactcagcccaatgcttatg gatgcacagtctccttatttgtacggtgcagaaaatgcggcatcaccaatcatgacttac aaacagaactactcaatcacaatgccatcaccgtcttaccaaggaaatgcacaactcctc aacacaactatcacagaccacgcttattctccaattgctgctgcttctcctttgtcacct caggcaatgggtcagtcaatgtcgcctttgtctcctgctcaacagtacgatccaaccaac ttctcgcctgcaggaggattctctaacacaaggtataacccattatctccacagacaaga ccgatgacttactcgccaaataatgatactccttattccccaacttacgaaccaaagaag aaataa

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