Tachysurus vachellii: 132861686
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Entry
132861686 CDS
T09596
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
tvc
Tachysurus vachellii
Pathway
tvc04010
MAPK signaling pathway
tvc04210
Apoptosis
tvc04218
Cellular senescence
tvc04620
Toll-like receptor signaling pathway
tvc04621
NOD-like receptor signaling pathway
tvc04622
RIG-I-like receptor signaling pathway
tvc04623
Cytosolic DNA-sensing pathway
tvc04625
C-type lectin receptor signaling pathway
tvc04920
Adipocytokine signaling pathway
tvc05132
Salmonella infection
tvc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
132861686 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
132861686 (nfkb1)
04218 Cellular senescence
132861686 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
132861686 (nfkb1)
04621 NOD-like receptor signaling pathway
132861686 (nfkb1)
04622 RIG-I-like receptor signaling pathway
132861686 (nfkb1)
04623 Cytosolic DNA-sensing pathway
132861686 (nfkb1)
04625 C-type lectin receptor signaling pathway
132861686 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
132861686 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
132861686 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
132861686 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tvc03000
]
132861686 (nfkb1)
Transcription factors [BR:
tvc03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
132861686 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
132861686
NCBI-ProteinID:
XP_060749213
LinkDB
All DBs
Position
18:complement(20185579..20215209)
Genome browser
AA seq
935 aa
AA seq
DB search
MTDEDPYLPVTHEYFDFDHQWITIDQNFPAVPISNQHRIEGPSLQITEQPKQRGFRFRYG
CEGPSHGGLPGACSEKNRKTYPQVTICHYHGPARIVVQLVTNAKQPHLHAHSLVGKQCDK
GICVVDLQPKDSTISFPNLGILHVTKKNVSKTLEERMSEAYRLGYNYGVVIHPEIDSVQV
ETRLPRELTEHQRHLICSAAANQAKDMDLSVVRLMFTAFLPDSEGGFTRRLEPVISEPIY
DSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEDDETGIVWEAFGDF
SPTDVHRQFAIVFKTPKYRDQNLQKPISVFVQLKRKSDNEMSEPKPFTYHPQIIDKEEVQ
RKRQKTLPNFPDYGGAGGGVGGMYRGPGGGAPSGGGHGGGGGGGGGGGGGGYYQGFYNNF
NSTYGFPSSMGGGGSGIKHSNHGPVEDTDEESDDDPDDDPGKGGVCFLPGLPGLEELCDE
SEDSEASDVFETETTDCLIEPRLTELAQRHARALFDYAISSHVHRLLAPQRPLMAAQDEN
GDTGLHLSVIHSQTSAVKNLAEVIMAIPGEDVLNMRNDLYQTPLHLAVVTEQKEAVEALL
EAGSDLTLTDRHGNTALHLAAQQKDGEMIRVLMRHREAMELCNTHNTAGLCPLHIAVLAN
SLLNMRALLEAGVDVEVRERTCGRTPLHLATEHDNVSLAGCLLLEGNAEVDSLTYNGSTP
LHIAAGRGSLKLSALLIAAGADPHKENFEPLFFRDDECCSEDKDKVDEGYIPGTSPLNMA
ASSKVREILNGKLYQPSTVFTMPQGDLHRLGTETKQALCKCLEESAGGWECLAHTLRLGI
LTNAFRLSSQPARTLLDSYEVSGGTVHELLAGLKSIGNVGAVSILQESITCDENENAHDE
DLCTDGAISNHLQALKLSVSDDNGVCDSGVETSFL
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgactgatgaggacccgtatcttccagtgacccacgagtactttgactttgatcaccaa
tggattacgatcgaccagaactttcccgccgtgccgatttccaaccaacatcgtatagaa
ggaccttctctccagattacggagcaacccaagcagaggggcttcaggtttcgatacggc
tgtgagggtccttctcacggtggactcccgggagcctgcagcgagaagaacaggaagacg
tatcctcaggttacgatctgtcattatcacggtccagcacgaattgtggtccagttggtg
accaacgctaaacagccccacctgcatgcgcacagcctcgtaggaaagcagtgcgacaag
ggcatctgcgtcgtcgacctccagcccaaagactccaccatcagttttccgaacctggga
atccttcatgtgactaagaagaatgtgagtaagactctggaggagaggatgagtgaagcc
tacaggctcggttacaactatggcgtggtcatccatcctgaaattgactctgtccaagtg
gagacccgccttcctcgagagctcacagaacaccagcggcatttgatctgcagtgccgca
gctaaccaggccaaagacatggacctgagtgtagtgaggctcatgttcaccgcctttctg
cccgacagcgagggcgggttcacgcgcagactcgagccggtcatatccgagcccatctac
gacagcaaagctccaaacgcctcaaacctgaagatcgtgcggatggaccgcacagcaggg
tgtgtgacgggtggagaggaagtgtacctgctctgtgacaaagttcagaaagatgacatc
caggtgcgcttttatgaggacgatgagacgggaatcgtctgggaggcatttggggatttc
tctcccaccgacgtgcacagacagttcgccatcgtgttcaagacgcccaagtaccgcgac
cagaaccttcagaaacctatctcggtcttcgtgcagctcaaaaggaagtcggacaacgag
atgagcgagcccaaacctttcacctatcacccacagatcatagataaggaagaagtccag
aggaagaggcaaaagacactgcccaatttcccagattacggcggagcagggggcggagtc
gggggcatgtacagagggccaggaggaggggctccatcagggggtggtcacggtggaggt
ggaggaggaggaggaggaggtggtggtggaggttattatcagggtttttataacaacttc
aactccacttatggctttccatcatccatgggtggaggagggagcggcattaagcactct
aatcacggtccggtggaagacacggacgaggagagcgacgacgatccggacgacgatccc
gggaaggggggagtgtgtttcctgcctgggttaccaggtttggaggagctttgtgatgag
agcgaggattcagaggcgtctgatgtgtttgagacagaaaccacagattgtttgattgag
ccaaggttaaccgagctagcacagagacacgccagggctttgtttgactatgccataagc
agtcacgttcatcggctgctggctccacagcgtccactgatggctgctcaagatgagaac
ggagacacgggactgcacttgagtgtgatccacagtcagacgagtgcagtgaagaaccta
gcggaggtgataatggcgattcccggagaggacgttttgaacatgagaaacgacctgtat
cagactccgttgcacctggccgtagtgactgagcagaaggaagcagtcgaggcgttattg
gaggcaggaagtgacctcactcttaccgatcgccatggcaacacggcgctgcacctggcc
gcccaacagaaagacggagagatgatccgagtgctgatgagacacagagaggcaatggaa
ttatgcaacacgcacaacacagcaggactgtgtcccctgcatatagccgtcttggctaat
agtctgctcaacatgagagctctgctggaggccggggttgacgtggaggttcgggagcga
acatgtggccgcacaccgctccacctcgctaccgaacatgacaacgtctcactcgccgga
tgcctgctgctagagggcaacgctgaagtcgacagtctgacgtataacggctctacgcct
ctacacattgcagcggggcggggctctctgaaactgagcgcactcctcatcgccgcaggt
gcagatcctcataaagagaacttcgagccgttgttcttcagagacgacgaatgctgcagt
gaagacaaagacaaggtggacgagggctacatcccaggaacgtccccacttaacatggct
gcttcatcaaaggtgcgagaaatcctgaatggtaaactataccagcccagcactgttttc
accatgccacaaggagacctgcacagactgggcacagagacaaagcaggcactgtgcaaa
tgtttggaggagtctgcaggcggttgggagtgtctcgcacacacactcagactgggcatc
ctcaccaacgccttccgcctcagctcacagccagcacgcacacttctggatagctacgag
gtatcgggcgggacagtgcacgagctcttagcaggtctgaagagtatcgggaacgtcggc
gccgtcagcatactgcaggagagcatcacgtgtgatgaaaacgagaacgcacacgatgaa
gatctgtgcaccgacggcgccatatccaatcacttgcaggctctaaaattatctgtgtcg
gacgacaacggcgtgtgcgatagcggcgtggagacgtccttcctgtaa
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