Tachysurus vachellii: 132862095
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Entry
132862095 CDS
T09596
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tvc
Tachysurus vachellii
Pathway
tvc03020
RNA polymerase
tvc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
132862095 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
132862095 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvc03021
]
132862095 (polr2a)
03400 DNA repair and recombination proteins [BR:
tvc03400
]
132862095 (polr2a)
Enzymes [BR:
tvc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
132862095 (polr2a)
Transcription machinery [BR:
tvc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
132862095 (polr2a)
DNA repair and recombination proteins [BR:
tvc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
132862095 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
132862095
NCBI-ProteinID:
XP_060749933
LinkDB
All DBs
Position
2:complement(3734840..3748686)
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSSDSACPLRLIRRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDAN
NPKIKDILGKSKGQPRKRLMHVYDLCKGKNICEGGEEMDNKFGVEQQENDEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIVRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSSWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPFKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSHKAFEKKFKFEYTNERALRRTLQEDVLKDVMTNAHVQSALEKEFDKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLVI
VNGDDPLSKQAQQNATLLFNIHLRSTLCSKRMTEEFRLSSEAFEWLLGEIETKFNQSIVH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVSEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLSMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTENKKKTII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGSWSPSVGSGMTPGGAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccactgcgcctcatcaggagggttcag
ttcggcgtcctcagccctgatgagcttaaacggatgtccgtcaccgaagggggcatcaag
taccccgagaccacagagggaggacgccccaaactgggaggtctcatggaccctcggcag
ggcgtcatcgagaggtctgggagatgccagacgtgtgcaggtaacatgacagaatgtccg
ggtcacttcggtcacatcgagctggccaagcctgtctttcacgttggtttcatcacaaag
atcatgaaagtcctccgctgtgtgtgtttcttttgctccaagctgctggtcgatgcgaac
aacccaaaaatcaaagacatcttgggcaagtcgaaaggtcagccgcgcaagcgcttgatg
cacgtgtacgacttgtgcaaaggtaaaaacatctgcgagggtggcgaggagatggacaac
aagttcggagtggagcagcaggagaacgacgaggacctcacgaaagaaaagggtcacgga
ggatgcggacgctaccagcctcgtatccggcgctcaggcctggaactgtatgccgagtgg
aagcacgtgaacgaagactctcaggagaagaagattcttctcagccccgaacgtgtgcac
gagatctttaaacgcatctcagacgaggaagatctcatcctggggatggatcccaagttt
gctcggcccgagtggatgatcgtcaccgtgttaccggtgccgccgctcgccgtcagaccg
gctgtggtcatgcagggatcagccaggaaccaggacgatttgactcacaagttagccgac
atcgtgaaaatcaacaaccagctgcgacggaacgagcagagcggagccgcggcgcacgtc
atagcagaagacgtcaagctcctgcagttccacgtagccaccatggtggacaacgagctg
cctggtctgcctcgagccatgcagaaatccggtcgtccgctcaaatccatcaaacagcgg
ctgaaggggaaagaaggcagagttcgtggaaacctgatggggaagcgtgtggacttctct
gccagaaccgtcatcacgcctgaccccaacttacagatcgaccaggtgggcgtgcctcgc
tccatcgccgctaacatgaccttccctgagatcgtcacgccctttaacatcgacagactc
caggaactcgtgaggagaggaaacagtcagtatcccggagccaaatacatcgtccgtgat
aacggagaccgaattgacctccggttccacccgaaaccgagcgaccttcaccttcagatc
ggctataaggtggagaggcacatgtgtgacggtgacatcatcatctttaacagacagccc
accttgcacaaaatgtctatgatgggtcacagagttcgaatcctgccttggtctacattt
cgactcaacctcagcgtaacgactccatacaatgccgacttcgacggagacgagatgaac
cttcacctgccccagtcgctcgagacccgtgccgagatccaggagctggcgatggtgcca
cgtatgatcgtcacaccccagtccaacagaccggtcatgggtatcgtgcaggacacgctt
acggccgtgcgcaagttcaccaagcgagacgtcttcttagagaggggtgaagtgatgaac
ctgctgatgttcctgtcctcctgggacggcaaagtgcctcagcctgcgatcctgaagcca
cgcccgctgtggaccggcaaacagatcttcagcttgatcattccaggtcacatcaacgtg
atccgtacacacagcacgcatccggacgacgaagacagcggcccgtttaaacacatctct
cccggagacacaaaggtgatcgtggaaaacggagaactaatcatgggaatcctgtgtaag
aagtccctcggtacatctgccggttctctcgttcacatttcctacctggagatgggtcac
gacatcactcggcttttctactccaacatccagactgtcgtcaacaactggctgctcatc
gaaggtcactctatcggtatcggtgattctatcgctgacgcaaagacgtatcttgacatt
cagaacaccatcaagaaagctaagcaagacgtgatagaggtcatcgagaaagctcacaac
aacgaactggagcccactccgggtaacactctgagacagaccttcgaaaaccaggtcaac
cgtatcctgaacgacgctcgagacaagaccggatcttctgcccagaagtcgctgtccgag
tacaacaacttcaaatccatggtggtggctggatccaagggctccaaaattaatatctca
caggttatcgctgtggtgggccagcagaacgttgagggtaagcgaatcccgttcggcttc
aagcaccggactcttcctcactttattaaggacgactacggtcccgagagcagagggttc
gtggaaaactcgtaccttgccggtctgacgcctacggagttcttcttccacgccatggga
ggcagagagggtttgatcgatacggctgtgaaaacggccgagacaggttatatccagcgt
cgtctgatcaagtctatggagtctgttatggtgaagtacgacgccacggtgaggaactcc
attaatcaggtggtacagctgagatacggagaggacggcttggccggagaggccgtggag
tttcagaacatggctacgcttaaaccgtcccacaaagctttcgagaagaagttcaagttc
gagtacacgaacgagcgagcactgcggcgcacgctgcaggaggacgtgttgaaggacgtg
atgaccaacgcgcacgtccagagcgctctggagaaggagttcgacaaaatgaaggaggac
cgagagatcttgagagctatttttcccactggagacagcaaggtggtgctgccgtgcaat
ctggctcgaatgatctggaacgcacaaaagattttccgcatcaacccgagaactccgacg
gatctcaaccctttaagagtggtggagggtgtgcaagaactgagtaagaagctggtgatc
gtgaacggcgacgatccgctaagcaagcaggcccagcagaacgccacgctgctgtttaac
atccatctccgctccaccctctgctccaaacgcatgaccgaagagtttcgtctcagctct
gaggccttcgagtggctcctcggagagatcgagaccaagttcaaccagtcgatcgttcac
ccgggtgagatggtgggtgctctggctgctcagtctctgggtgaacctgccactcagatg
accctgaacaccttccattacgctggcgtgtcggccaagaacgtcaccctgggtgtgcct
cgactcaaggagctgatcaacatctccaaacgtcccaagactccgtccctgacagtgttc
ctgctgggccaggcggcccgcgacgcagagcgcgccaaagacatcctgtgtcgcctggag
cacacgaccctccgtaaggtcacggccaacacggctatctactacgaccccaaccctcag
agcacggtggtgtcagaggatcaggagtgggtgaacgtttactacgagatgcccgacttc
gacgtgactcgcatctctccatggctcctccgcatcgagctggaccgcaagcacatgacg
gaccgcaagctctccatggagcagatcgccgagaagattaacgcaggttttggtgacgat
ctaaactgcatcttcaatgacgataacgccgagaagctggtgctgcgaatccgaatcatg
aacagcgacgagaacaagttccaggaggacgaggaggtggtggataagatggacgacgac
gtgttcctgcggtgcatcgagtccaacatgctaacggacatgaccttacagggcatcgaa
caaatcagcaaggtgtacatgcatcttcctcaaactgagaacaagaagaagaccataatc
acagaggagggagagtttaaagctctacaggaatggattctggagacggacggcgtcagt
ctcatgagggtcctcagcgagaaggacgtggacccagtcaggaccacctctaacgatatc
gtggagatcttcactgtgctcggtatcgaggcggtacgcaaggctctggagagagagttg
taccacgtcatctccttcgacggttcctacgtgaactaccgccacctcgccctcctgtgc
gacaccatgacctgcagaggtcacctgatggccatcacccgccacggcatcaacagacag
gacaccgggccgctcatgaagtgctcttttgaagagacggtggacgtcttgatggaggcg
tcgtcccacggagaatgcgatcccatgaagggcgtgtctgaaaacatcatgctcgggcag
ctggctcctgcaggcaccggctgcttcgacctgctgctggatgctgagaaatgcaaatat
ggcatggagattcccaccaacatccctggtatcagcgtggctggaccaaccggaatgttc
tttggttctgcccccagccctatgagtggcatgtctccggccatgacgccctggaacacg
ggggccaccccggcttatgggtcatggtctcccagcgtgggaagtggaatgactcctgga
ggtgcaggtttttcaccaagtgccgcctccgacgccagcggtttctctccaggttactcg
cctgcgtggtctcctacacccggctcccctggatctcctggtccagccagtccttacatt
ccctctccaggtggcgccatgtctccaaattattctcctacgtctccagcgtatgagccg
cgctcccctggaggctacaccccacagagtcctggctattcccccacgtccccgtcgtat
tctcccacttctccttcctactctcccaccagccctaactacagcccaacgtctccatct
tattccccaacgtctccatcttactctcccacatctccatcttactccccaacctcacca
agctattcacccacatcaccctcttactctccgacgtctccttcttattcccccacttct
ccgtcgtactctccgacgtctccttcgtactctccgacttcgccttcttattctccgacg
tctcccagctattcgcccacctccccctcgtactcgcccacctccccctcgtactctccg
acttccccctcgtactcgccgacctctccttcgtattccccgacatcaccctcctattcc
ccgacgtctcccagttacagcccgacctcacccaattacacgcccacttcacccagctac
tcacccacctctccatcttacagccccacctcaccttcgtattcgcccacgtctccgaat
tacacacccacaagccccaattattctccaacgtctccgtcttactcccctacctctcca
tcttactctccatccagcccacgttacacaccccagtctcctacgtacaccccgagctcg
ccctcgtacagcccgagctccccgtcttactcccccacctctcccaaatacacccccacc
tctccatcatacagccccagctctccggaatacaccccgacgtcacccaaatactctccc
acttcgccaaagtactcgcccacgtctcccaaatacagccccacatctccaacttattct
cccactacgcccaaatacagccctacttctccgacgtactccccaacgtctcctacctac
accccgaccagccccaagtactctcccacttctcctacgtactccccaacgtctccaaaa
tactcaccaacttcaccgacatactctcctactagtcccaaaggttcgacatacagcccc
acttcgccggggtacagtccgacgtctcccacctacagtccagccatcagccccgatgac
agcgacgaggaaaacaactga
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integrated database retrieval system
