Trametes versicolor: TRAVEDRAFT_70437
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Entry
TRAVEDRAFT_70437 CDS
T04795
Name
(RefSeq) beta and beta-prime subunits of DNA dependent RNA-polymerase
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
tvs
Trametes versicolor
Pathway
tvs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tvs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TRAVEDRAFT_70437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvs03021
]
TRAVEDRAFT_70437
Enzymes [BR:
tvs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TRAVEDRAFT_70437
Transcription machinery [BR:
tvs03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
TRAVEDRAFT_70437
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF2786
DUF1317
Motif
Other DBs
NCBI-GeneID:
19419299
NCBI-ProteinID:
XP_008035936
JGI:
70437
LinkDB
All DBs
Position
Unknown
AA seq
1403 aa
AA seq
DB search
MKEPVSHQAPKVIKALQFSLLNNQDTVKLAEFEVTHRDLYTPIDRLPVKNGVLDRRLGTT
EKSAFCETCGLNSVDCVGHYAYIKLVVPVFHIGYFKHTIGILQCICKTCARVLLEEPDRR
SYLKRFRRPNLENLQRMTLVKSVNALARKTVYCPYCAATNGTVKKAGALKIIHDKFRAKK
TAEEMEKWKRTFAPAIEAQKELGMYVNKAIHEDLNPLKVLDLFKRISDEDCELLGLRPEY
GRPEQYIWQYISVPPVAIRPSVAQDGASNEDDLTVKLTEIVFSNALIKQGLVKGAPTAQF
MEQWEFLQLSVAMYINSELPGVPSQLGQKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRT
VISPDPNLRIDEVAVPERVAKILTYPERVTGHNIDRLKKAVRNGCDVHPGANYVTAGSNG
FKKYLKFGNRTAIADGLRIGDIVERHVIDGDIALFNRQPSLHKLSIMCHRIKVRPWRSFR
LNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGEPVIAAIQDFIT
ASFLLSRRDTFFDRRQFTQICSYFADADLQIDIPPPAIWKPVRLWTGKQVFNVLMRPNRQ
SKVFVNVESKCNKEDKPQAACYPRMRPAPDLSPNDGWLVIVNSEIMCGVMDKATVGSGKK
KSVFGVIMRDYGPHEAAAAMNRVAKLCARYLANIGFSLGINDVIPGPVLSGKKDSMVEDA
YAACERLIIRAKKGLLENKPGCDQEQTLEAEISKVLSDVRGNVGEICMKELSRHNAPLIM
ATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSRDPPSKGFVRNSFYT
GLTPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVGGVVQF
RYGDDGLDPACLEGDAQPVDYERAWRHACSLASRAPRGLLPYEIIEFVDHELSTRKYTTE
CTAAYLATIRSFISENIAQRLGEVRKRHGMFEALEREDEWDADTDLTMGASDADKAAVDN
KIKVTEEQLRLFLDVCWTKYVKAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMN
VTLGVPRIKEIINAAKAISTPIISCKLVAYDSEASARIVKGRLERTHVGDIASVLEEAWA
PEYTYIGVIVDMKTIQDLQLELTLDDIKWAIVGARKLKIKQESITVIPRKNRLRIYVDGA
DKYYRLRELKRALPDVVVKGVPTIRRAIINIKENNDHRGKKGDKELLVEGYGLQKVMTTQ
GIVGEQTTSNHVIEIAQVLGIEAARRTIINEIQYTMQSHGMSIDPRHVMLLGDVMSYKGE
VLGITRFGVAKMKDSVLMLASFEKTTDHLFDASAYGKTDSIAGVSESIIMGNPAAMTGTS
MPALITPAPSISKPRKLLFEGAL
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagcccgtgtcccaccaggcacccaaagtcatcaaagcacttcagttcagcttg
ctcaataaccaggacacggtcaagcttgccgaattcgaggtcacccatcgcgatctatac
acccccatcgaccgcctgcccgttaagaatggtgtgcttgatcgtcgtttaggaacgaca
gagaaaagcgccttctgcgagacttgcggcctgaactcggtggactgtgtgggacactat
gcatacatcaagctggtcgtccccgtcttccatatcggctacttcaagcacaccataggc
atactgcaatgcatttgcaagacatgtgcgagggtgctgctcgaagagcccgaccgtcgc
tcttacctcaaacgcttccgaagacccaacctcgaaaacctgcagaggatgacactcgtc
aagtccgtcaacgcgctcgcccgcaagacggtatactgtccatactgtgcagctacgaac
ggaaccgtcaagaaggcaggcgccttaaagatcatacacgacaagttccgcgcgaagaaa
actgccgaggagatggagaagtggaagaggaccttcgctcctgcaatagaggcccagaag
gagttgggcatgtacgtcaacaaggcgatccacgaagacctgaaccctctgaaggttctt
gacttgttcaaacgtatctctgacgaagactgtgaactccttggacttcgaccggagtac
ggtcggccagagcagtacatctggcagtacatttccgtccctcccgtggcgattcggccg
tcggtagcacaagacggcgcctcgaacgaggatgatctcaccgtcaagcttactgaaatc
gtgttcagcaacgcgctgatcaagcagggtctcgtcaaaggtgctcctaccgcacagttc
atggaacaatgggagttcctccagctctccgtcgccatgtacatcaactccgagcttccc
ggcgtgccatcacaactcggccagaaacccatccgagggttctgccagcgtctgaagggc
aaacagggacgcttccgtggtaacttgtccggaaagcgtgtcgacttctccggccgtacc
gtcatctcccccgacccgaacctccgcatcgacgaggtcgccgtgccagaacgggtcgcg
aagattctcacataccccgaacgcgttactgggcacaacatagaccggctgaagaaggcg
gtgcgaaatgggtgcgatgtccatccaggcgcaaactacgtgactgcggggagcaatggc
ttcaagaagtacttgaagtttggtaaccggacagccatcgcggatggccttcgtataggc
gacatcgtggaacggcacgtcattgacggtgacattgcactgttcaatcgacaacccagt
ttgcacaagctctctatcatgtgtcataggatcaaagttcgaccatggagatcattccgt
ctcaacgagtgtgtttgcggtccttacaacgctgatttcgatggagacgagatgaacctt
cacgtcccgcaaacagaagaggcgcgcacggaagccctcgagcttatgagcgtgaaacac
aacctcgtcaccccacgaaacggcgaacccgtgatcgccgccatccaggacttcatcacc
gcctctttcctcctctcccggcgcgacaccttcttcgaccggcggcagttcacgcagatc
tgctcctacttcgcggacgcggacctgcagatcgacatccccccgcccgcgatctggaag
cccgtgcggctctggacgggcaagcaggtcttcaacgtgctcatgcgcccgaacaggcag
tcgaaggtgttcgtgaacgtcgagagcaagtgcaacaaggaggacaagccgcaggcggcg
tgctacccgcgcatgcggcctgccccggacttgtcgcccaatgacggctggctggtgatc
gtgaacagcgagatcatgtgtggcgtcatggacaaggcgacggtgggcagcgggaagaag
aagtcggtgtttggtgtcattatgcgcgactatggcccgcatgaggcagccgcagcgatg
aacagggtagcgaagctctgcgcacggtatcttgctaacatcgggttttctctcggtatc
aacgacgtcattcccggacctgttctgtcgggcaagaaggatagcatggttgaagacgca
tacgctgcctgcgagaggctaattatccgggcaaagaagggtctactggagaacaagccc
ggttgcgaccaggagcaaactcttgaagcggaaatctccaaggtgctgtccgacgtccgt
ggaaatgtaggagaaatctgcatgaaagagctgagccgccacaacgctcccttgatcatg
gcaacgtgtggttccaaaggttccgtcatcaacgtctcccagatggttgcctgtgtcgga
cagcaaattattgccggtcatcgtgtacccgacggtttccaggaccgctcgctgccccac
ttccccaagaagtcgcgcgacccgccgtcgaagggcttcgtgaggaacagcttctacaca
ggcctcacccctacagagttccttttccacgccatctcgggtcgcgaaggtctagtcgac
accgccgtcaagactgctgagacgggctacatgcagcgacgacttatgaaggcgctggag
gatctcgtcacgcattacgactcgtccgtgcgcaacgccgtcggtggagtggtgcagttc
cgatatggtgacgacggcctcgacccagcatgtctcgagggtgacgctcagcctgtggac
tatgagcgagcatggcgacacgcctgctcccttgcttccagggctccccgtggtctgcta
ccgtacgagattatcgagttcgtcgatcacgagctctcgacacgcaagtacaccaccgaa
tgcacagcagcgtatctcgcgacgattcgcagcttcatctccgagaacatcgcacaacgg
ctcggggaagtgcgcaagcggcacggcatgttcgaagcgctggagcgcgaggacgagtgg
gacgccgataccgacttgacaatgggtgcatcagacgccgacaaggccgccgtcgacaac
aagatcaaggtgaccgaggagcagctgcggctgttcctcgacgtttgctggacgaagtac
gtcaaggcgaagatcgagcccgggtccaccgtcggcgccgtcggcgcacagtccatcggc
gagcccggcacgcagatgacgctgaagacgttccatttcgcgggtgtcgcgtccatgaac
gtcacgctcggggtgccgcgcatcaaggagatcatcaacgctgcgaaggccattagcacg
cccattatcagttgcaagctcgttgcgtacgacagcgaggcttctgcgcggatcgtgaag
gggcggctggagcgcacgcacgtcggagatatcgcatccgtcctcgaggaggcgtgggct
ccagagtacacctacatcggcgtgatagtcgacatgaagaccattcaagatcttcaactc
gagctcacgctggacgacatcaaatgggccatcgtaggcgcgcggaaactcaagatcaag
caagagtccatcaccgtcatcccgcgcaagaaccgcctgcgtatatacgtagatggggcc
gacaagtattatcgcctgcgcgagctcaagcgggcgttgcccgacgtcgttgtgaagggt
gtgcccactatcaggcgtgctatcatcaacatcaaggagaacaacgaccacaggggcaaa
aagggtgacaaggagctgctcgtggaaggctatggcttgcagaaggtcatgaccacccaa
ggtattgttggcgagcaaacgacctccaaccacgtcatcgagatcgcgcaggtcctcggg
attgaggctgcgcggcgaacgatcatcaacgagattcagtataccatgcagagtcacggc
atgagtatcgatccgcggcacgtcatgctgcttggggacgtcatgtcctacaagggcgaa
gtcctcggtatcacgcgcttcggtgtagcgaagatgaaggacagcgtgctcatgttggct
tcgtttgagaagacgacagatcatctgttcgatgcgtctgcgtacggaaagacggacagc
attgctggcgtgtccgagagtatcattatgggcaaccccgctgcaatgacgggtacctcg
atgcccgcgctcattactcctgcgccgtcaataagcaaaccaagaaaattgttgttcgag
ggggctttgtga
DBGET
integrated database retrieval system