Tripterygium wilfordii (thunder duke vine): 120009676
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Entry
120009676 CDS
T07256
Name
(RefSeq) Fanconi anemia group J protein homolog isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
twl
Tripterygium wilfordii (thunder duke vine)
Pathway
twl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
twl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120009676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
twl03400
]
120009676
Enzymes [BR:
twl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120009676
DNA repair and recombination proteins [BR:
twl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
120009676
FA (Fanconi anemia) pathway
Downstream FA components
120009676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Yippee-Mis18
ResIII
DUF1700
Motif
Other DBs
NCBI-GeneID:
120009676
NCBI-ProteinID:
XP_038716276
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All DBs
Position
11:complement(14241685..14251755)
Genome browser
AA seq
1273 aa
AA seq
DB search
MFAGEKNPKMVILKKPKSTSSNNNVYHIGGIQVAFPHQPYGTQFAFMGRVISTLDRATKD
GHCHALLESPTGTGKTLSLLCSALAWLKNYQVKNQYANLSNSKPNPESITDPLNHGGGFI
PESQPPSFAAPVNLETGNPAPNNKTQKKKNAPTIYYSSRTHSQLSQVIREYKKTSYRVPM
AVLASRKHYCTNALVYGKDNIDEECKLLLRENDLGCSHFKNVHKLKGHPSLRKGGIHEVH
DIEDLLKVGQVVEGCPYYAARSMAEEAQLVFCPYNYVINPVIRGAMEVDIEGAIVILDEA
HNIEDIARDAGSMDLDEDVLNKLQMELEQLSLSDATVYQPLFDMAEGLVSWIELRKNTLE
KREFQHYCSCWTGDKALKELQEANISQNCFPILLDCATKAIKAATDTESVEAHLSGFAVT
VLEGLFSSLTYFFSRNGSHTSDYQLALQRYVKREAKNVGGGWTHTISLWCLNPAVVFKDI
TNLSLSVILTSGTLSPMTSFSSELGVQFGTCMEAPHVIDVESQVFTSIITTGLGNYPLNA
SYKTADGYAFQDALGKSLEEICKIVPSGALVFFPSYKLMEKLCNRWRATGQWSKLNARKS
LFVESRGGSQEDFEDTLRGYYASLHKSNKPAVRRRKVKKMDPDHPDAIESTENTTKDGAG
FLAVCRGKVSEGIDFSDDNARVVIIVGIPFPNINDIQVALKKRYNDTYKTSKNLLSGSEW
YCQQAFRALNQAAGRCIRHRFDYGAIILLDERFQEERNRIYISKWLRKSIQEFESFETSL
EKLKSFFCDIKERIGKKMADLSPHSDKSKGKKALKDQSYGLTENKILKTNKPDHFEQNLG
SVANCNGTRSQLNSQTDLEAWGHVLIDEDSDRECVELESMAQKDMRTADSLSMEFSHEVL
EISTVKETPVMDGSITMASLGSLSRNGHCNSMSTQVNTKYKDEVASRSMYLENQTKAPHR
AQRSAEVTPEKESTGITSILTVDVESSFNLSTNSHTQKRRKFINSTLVDLTGEQPDGLDT
QTCCRTGVLKSSMANGDITRRIEFGFEDSGSRHQFAKSNSPGSPLLNSSVVSSSSSGLFT
DRMLQFSCSLCRSPLGLPENNLYVRCSITSTSKVHLVTLVKERSEHHDVNTSTCIPVVMA
DISLVDRRLFLKNLQGHPGQGVWCQEDGCVFSTIFCPFCSTTRNSLGVQIMATDASNVQL
LNKILFFFDCLEIHNLEGSQEKAPNQKETLQANGSGMDRAPILDYIDQYSYSPQQTVGHW
RTTKSKLRLPKRS
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgttcgccggcgaaaaaaacccaaaaatggtcatactgaaaaaacctaaatcgaccagc
tccaacaataacgtgtatcacatcggtggcattcaggtggcgttcccgcaccagccctat
ggtacgcagttcgctttcatgggcagggtcatatcgacgctcgatcgggcaacgaaagac
ggccactgtcacgcgttgctcgagtcacccactggcactgggaagacgctgtccctgctg
tgttcggctctggcgtggctgaagaattaccaggtgaagaatcagtatgccaatctctct
aactcgaagcccaatccagagtcaataaccgatcccttgaaccatggaggcggatttatc
cctgaatcgcaacctccaagttttgcagcgcctgtgaatttagaaacagggaatcctgca
cccaacaacaaaactcagaagaaaaagaatgcacccacaatatactactcatcgaggact
cattcgcaactttctcaagtaatccgtgaatacaaaaaaacttcttatcgagtgccaatg
gcagttttggcttcccgaaaacactactgcacaaatgcactcgtatacgggaaagacaac
attgatgaagaatgtaagctgcttctgagagagaatgatcttggatgctctcatttcaaa
aatgtacacaaactcaaaggtcatccatcactcaggaaaggaggtatccatgaggtccat
gatattgaagatcttcttaaagttggacaagtcgtcgaaggttgtccatattatgctgca
cgttccatggcagaggaagcacagttggttttctgcccatacaattacgttattaatcca
gtcattcgaggagcaatggaagtagatattgaaggagccattgttatccttgatgaagcc
cacaatattgaagacattgctcgtgatgctggtagtatggatctcgatgaagatgttttg
aacaaattgcagatggaacttgagcaactttccttatccgatgctacagtttaccagcca
ctgtttgatatggcggagggccttgtaagttggattgaactcaggaaaaacacactcgag
aaacgtgaatttcagcattactgttcttgttggactggtgataaggctttgaaagagctc
caagaagctaacatatcacaaaattgctttcccatcttgcttgattgtgccacaaaggca
atcaaagctgcaacagatacggaatcagttgaggctcatttaagtggtttcgcagtaacc
gtgttggaagggttgttctcttctcttacttatttcttctcgcgaaatgggagtcatacg
tctgactatcagcttgctttgcaacgatatgttaaaagggaagctaaaaatgttggcggc
ggctggacacatactataagtttgtggtgcttgaatccagctgttgttttcaaggatatc
acaaacctttccctgtctgtcattttaacatctgggactctgtcaccaatgacttccttt
tcatctgagcttggagttcagtttggaacttgtatggaggctcctcatgtaattgatgtt
gaatcacaggtcttcacttctataatcaccacaggtctgggtaattacccattgaatgca
agttacaaaacagcagatggatatgcttttcaggatgcccttggaaaatctttagaggaa
atctgcaaaatcgttccaagtggtgctcttgtgttcttcccaagttataagctgatggaa
aaactatgtaaccgatggcgtgcaacaggccaatggtccaaattaaatgcaagaaaatcc
ctttttgttgagtcaaggggaggaagtcaggaagattttgaggacacgttaaggggttat
tatgcctcactacataaaagtaataaacctgctgttaggagaagaaaggttaagaagatg
gaccctgatcaccctgatgcaattgagtcgaccgaaaacaccacaaaagatggagccggt
ttccttgcagtttgccgaggaaaggtctcagaaggaattgatttttctgatgataatgct
cgagttgttataattgttggcattccatttccaaacataaatgacattcaagtcgctcta
aagaaaaggtacaatgatacatacaagacatccaaaaacctgcttagtggaagcgaatgg
tattgccaacaagccttccgagctttaaatcaagctgcaggacgttgtatacgacatagg
tttgactatggagctatcatcttactagatgagcgattccaggaggagagaaatagaata
tacatttcaaaatggcttaggaaatctattcaagaatttgaaagctttgaaacatcgcta
gagaaactgaaatcctttttctgtgatatcaaggaaaggattgggaagaaaatggccgat
ttgtcaccacattcagacaagagcaagggcaaaaaggctttgaaggatcaaagttatggg
ctgacagaaaacaaaatacttaaaacaaacaagcccgatcactttgagcagaatctaggt
tctgtggcaaactgtaacggcactcgttcccagttaaattctcaaactgatctcgaagct
tggggacatgtgctaatagatgaggacagtgacagagaatgtgttgaactggaaagcatg
gctcagaaagatatgaggacggctgattcattatctatggaattttcccatgaagttcta
gaaatatctaccgtcaaagaaacccctgttatggatggcagtataacaatggctagtttg
ggatccttatcgaggaatggtcactgtaattcaatgtcaactcaagtcaacaccaaatac
aaagatgaagtagcatctcgttccatgtatttagaaaaccaaactaaggctccccacaga
gcccagcgttcagcagaagtcactcctgagaaggaatcaactggaattaccagcatcctg
acagtggatgtggagtcatctttcaatttgagtactaattctcatacccagaaaagaaga
aagttcattaactcaacattggtggaccttactggagaacagcctgatggtcttgatacc
caaacctgttgccgtactggtgtcttaaaaagctcaatggccaacggagatattactcgc
agaattgaatttggctttgaagactctggttccagacaccaatttgccaagtccaattca
cctggatcacccttgttaaatagttcagttgtttcatcttcgtcttctggccttttcact
gacaggatgctacaattttcctgctcactctgtagaagccccttgggtcttccagagaac
aatctatatgttagatgctcaataacttcaacatcaaaagttcacttggttacccttgtg
aaagaaagatctgaacatcatgatgtgaatacctcaacatgtatacctgtagttatggct
gatatatccttagttgatcggcgtctattcctaaaaaacctgcaaggtcatccaggacag
ggtgtttggtgtcaagaagacgggtgcgtttttagtaccatcttttgccccttctgcagt
accaccagaaacagtcttggtgtacagatcatggcaactgatgcatcaaatgttcaattg
cttaacaagatattattcttctttgattgtttggaaatacataatcttgaaggatcacag
gaaaaggcaccaaaccagaaggagacattgcaagctaatggctcgggaatggatagagct
cccattttagattacatcgatcaatattcatattccccacaacaaaccgtgggacactgg
aggactacaaaatcaaagctgagactaccaaagcgaagttga
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