KEGG   Thalassospira xiamenensis: TH3_19615
Entry
TH3_19615         CDS       T03639                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
txi  Thalassospira xiamenensis
Pathway
txi03030  DNA replication
txi03410  Base excision repair
txi03420  Nucleotide excision repair
txi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:txi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TH3_19615
   03410 Base excision repair
    TH3_19615
   03420 Nucleotide excision repair
    TH3_19615
   03440 Homologous recombination
    TH3_19615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:txi03032]
    TH3_19615
   03400 DNA repair and recombination proteins [BR:txi03400]
    TH3_19615
Enzymes [BR:txi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     TH3_19615
DNA replication proteins [BR:txi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     TH3_19615
DNA repair and recombination proteins [BR:txi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     TH3_19615
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TH3_19615
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH_5 Taq-exonuc
Other DBs
NCBI-ProteinID: AJD54025
UniProt: A0A0B4Y4B1
LinkDB
Position
4310036..4312861
AA seq 941 aa
MTDSAPSTSKSPRRVVLVDGSGFIFRAFHALPPMTSPDGTPVNAVYGFCTMLMKLREDTK
PDHMAVIFDTKGKSFRNDFYPEYKAHRPPPPEELVPQFGLIRDATRAFNLPSIELEGYEA
DDLIATYARQAEAEGSDVIIVSSDKDLMQLVTDRVQMFDAMKNRTIGAPEVLEKFGVTPD
KVIDIQALAGDSVDNVPGVPGIGIKTAAQLIDEYGDLDGLLERAGEIKQPKRREKLIENA
ELARISRDLVTLKTDVPVVEKLDGFELREPDPDVLLSFVSTHGFKSLISKIKAKFGGSVD
ADGVVEPGTGVNDISVEKAEYELMQDEDRLKHWISMAEYAGTVAVDTETTSLNAHQAKLV
GISLSTEPGNGCYIPVGHGQGHGESGEAQGGFDFDAPAEAPTEIEVPKQIPLDRAIALLK
PLLEDPGVLKVGQNLKYDMIVLSRHGINVAPIDDTMVLSYVLDGTSHGHGMDELAELHLD
YKPIKFSDVCGSGKTQITFDQVPLDKALDYAAEDADITLRLHRLLKPRIAQEHMASVYET
LDRPLVPVLAKMESLGIRIDADKLKTLSNDFAKRMAALEETIHEMAGEPFNLGSPKQLGE
ILFEKMSLPGGKKTKTGAWQTGADVLEALAAQGHDLPTKILEWRQLSKLKSTYTDALANH
INPETGRVHTSYGQTNVNTGRLSSNDPNLQNIPIRSEEGRKIRTAFISEPGCKLISADYS
QIELRLLAHVAEIDALRDAFKNGEDIHAATASKVFGVPIEGMDPMVRRKAKAINFGIIYG
ISAFGLANQLGIPQKEAKAFIEAYFEIYPGIRDYMEQAKDFAKKHGFVRTLFGRHIHING
INDKNGMRRSFGERAAINAPIQGGAADIIKRAMIAVPGALLDAGLKTRMLLQVHDELIFE
APEDETEKAVKVIREVMENAAHLSVPLIADAGIGDSWADAH
NT seq 2826 nt   +upstreamnt  +downstreamnt
atgacagattctgcgccatccaccagcaaatccccccgccgcgtcgttctggttgacggg
tccggctttatcttccgggcctttcacgccttgccaccaatgacaagccccgacggtacg
ccggtgaatgcagtgtatggcttctgcaccatgctgatgaaattgcgcgaagacaccaag
cctgatcacatggcggttatcttcgataccaagggaaaatcgttcagaaacgatttctat
cccgaatacaaggcgcaccgtccgccgcccccggaagaattagtcccccagttcgggctt
atccgtgatgcaacgcgtgccttcaacctgccttcgatcgaacttgaagggtacgaggcc
gatgacctgatcgcgacctatgcccgacaggctgaagccgaaggttccgatgtgattatc
gtgtcttcggacaaggacctgatgcaacttgtcacggaccgggtgcaaatgtttgatgcg
atgaagaatcgcaccattggcgcgccggaagttctggaaaaattcggcgtcacaccggat
aaggtcattgatatccaggcattggctggcgattccgttgataacgtacccggtgtgccc
ggcatcggtatcaaaaccgcagcccaactgattgatgaatatggcgatctggatggcttg
ctggaacgtgcaggagaaatcaagcaacccaaacgccgtgaaaaattgatcgagaatgcc
gaactggctcgcatttcgcgcgatctggtgaccctcaaaaccgacgttccggttgtcgag
aaacttgatggttttgagctgcgcgaacctgatcctgatgttcttttaagctttgtttca
acacatggctttaaatcactgatttctaaaataaaggcaaagttcggtggctctgttgat
gcagacggcgttgtggagccgggaaccggtgtcaatgatatcagcgttgaaaaggcagaa
tatgaattgatgcaggatgaagatcgcctaaagcactggatttcaatggccgaatatgcc
ggtacggttgctgtcgataccgaaaccacatcactgaatgcccatcaggccaaactggtt
ggcatttcgctttcgaccgaaccgggcaatggctgctatatccctgttgggcacggacag
ggtcatggtgaaagtggcgaagcacagggtggatttgattttgatgcccccgccgaggca
ccgacagaaatcgaagtgccaaagcaaatcccgctggatcgcgcgattgccttgctcaaa
ccccttctggaagacccgggtgttctcaaggtcggccagaacctgaaatacgatatgatc
gtattgtcccgtcacggcattaatgtcgccccgatagacgacaccatggtgctgtcctat
gttctggacggcacaagccacggccatggcatggatgaattggccgaactgcatctggat
tacaaaccgatcaagttttccgatgtttgcggatcaggcaaaacacagatcacctttgat
caggtcccgctcgacaaggcgcttgattacgccgccgaagacgccgatatcacgctgcgc
ctgcatcgacttctaaagccgcggattgcacaggaacacatggccagcgtttatgaaacg
ctggatcggccactcgtccctgtactggccaaaatggagagccttggcatccgtattgat
gccgacaagctcaaaaccctgtcgaatgactttgccaagcggatggctgcccttgaagaa
accatccatgaaatggccggtgaaccgttcaatctgggcagcccaaaacagcttggcgaa
atcctgtttgaaaagatgagcctgccgggcgggaaaaaaaccaaaaccggtgcatggcag
accggcgcggacgttcttgaagcattggcggctcagggacatgacctgccgaccaaaatc
cttgaatggcggcagctttcaaagctcaaaagcacctataccgatgctcttgccaatcac
attaatcctgaaaccggccgcgtccacacaagctacggccagaccaatgtgaataccggt
cgcctttcgtcaaacgatcccaacctgcaaaacatcccgatcagaagcgaggaaggccgt
aaaatccgtaccgcctttatctcggagcccggctgtaaactgatttctgccgactattcg
cagatcgagttgcgccttctggcgcatgtggccgaaatcgatgcccttcgtgatgccttt
aaaaacggcgaggatatccatgccgccacggcatccaaggtgtttggtgttccgattgaa
ggcatggatccgatggtccgccgcaaagccaaggccatcaatttcggcatcatttacggg
atttcggcctttggcctcgccaaccagcttggtatcccgcaaaaagaagccaaagccttt
atcgaagcctatttcgaaatttatcccggcattcgcgattatatggaacaggcaaaagac
ttcgccaaaaagcatggctttgtcagaactctgtttggccgtcatattcatatcaacggc
attaatgataaaaacgggatgcggcgaagcttcggcgaacgtgcggccatcaacgcccct
attcagggcggtgccgctgacatcatcaaacgcgccatgattgccgttcccggtgccctt
cttgatgcggggcttaaaacccgcatgctgcttcaggttcatgatgaattgattttcgag
gcccccgaagatgaaaccgaaaaggccgttaaggtgatccgcgaggttatggaaaatgcc
gcacacctgtccgtaccgcttatcgcagatgccggtatcggggatagctgggcggatgca
cactga

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