Verticillium alfalfae: VDBG_01272
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Entry
VDBG_01272 CDS
T02227
Name
(RefSeq) CLP1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
val
Verticillium alfalfae
Pathway
val03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
VDBG_01272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
val03019
]
VDBG_01272
Enzymes [BR:
val01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
VDBG_01272
Messenger RNA biogenesis [BR:
val03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
VDBG_01272
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
KTI12
AAA_16
AAA_24
MMR_HSR1
ATP_bind_1
nSTAND3
AAA_18
AAA
Sigma54_activat
AAA_22
AAA_11
TniB
SRPRB
Motif
Other DBs
NCBI-GeneID:
9534175
NCBI-ProteinID:
XP_003009589
UniProt:
C9S6H6
LinkDB
All DBs
AA seq
459 aa
AA seq
DB search
MSIPGLGLETFAAQPAAPTGASTTRVIKLEQLSEWRFEVGFSSEVEVKLVAGVAEKDGTE
LAAHHVYRFSGVKTKILTFMGCQLEVTGTCDDEFLADFPKPTDSPMNSYLNLHFKLHALR
QHAAAAKAEGPRVMICGPPNTGKTSVARTLTSYATRLEGQPLVVNMDPKEGMLSLPGTLS
ASALASILDIEAVDGWGTTPTSGPSQVPVKLPLAFYYGRTSPAEDPKKYLELVSRLAGSV
TSRFTQDPDVKSSGMIIDTPSTDEKSKASMEVLVHIAEELSANIILVLGSSRVNTELSRR
FANERTGLGEQIHVIHLDRSEGVATRDEGYMQQACEASIREYFFGNIGRTLSPATQQVDF
DSLTIYRLGDYSVYGNGDEGLMLSEPSGLMAHWTLAVMYASTKDSPETIRNANVMGYVYV
AEVDKERRKMKVLAPVSGRLGDRPLLWGKWPEPFVNLLG
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtctattccaggacttggcctggaaaccttcgctgctcagccagcagctcccactggc
gcctccactactcgggtcatcaagctcgagcagctatccgaatggcgattcgaggttggc
tttagctcagaagtcgaagtgaagcttgttgccggtgttgcagaaaaagatggcacagag
ctcgccgcacaccacgtctatcgcttcagcggtgtcaagacgaaaatcctcacattcatg
ggctgccagctcgaagttactggcacctgcgatgacgagttcctcgcagacttcccgaag
cctaccgactcacccatgaattcctatctcaatcttcacttcaaactacatgctcttcga
cagcatgcagcggcggcgaaagcagaaggaccacgcgttatgatctgtgggcctccgaac
acaggcaaaacaagtgtcgcgcggacattgacgagctatgctacacgactggagggacag
cctttggtggtcaacatggatcccaaagagggcatgctgtctctgccaggcacactgagc
gccagtgctctggcttccattctggatatcgaggctgtagacggatggggcaccacgccc
accagcgggccaagtcaggtacctgtcaagttacctctagcattctactacggacggaca
agcccggccgaagaccccaagaaataccttgaactcgtaagccgcttggcaggctctgtg
acttctagatttacccaagatcccgacgtcaagagctctggaatgatcatcgacacgcct
agcacggatgaaaagagcaaagccagcatggaagttctcgtgcatattgccgaagagcta
tcagcaaacatcatcctcgtattgggttcttcacgcgtcaacacagagttgagcaggcgg
ttcgccaatgaacgtaccggcctcggagaacagatccatgttattcatctcgacagatct
gagggagtggccacgcgagatgaagggtacatgcaacaagcatgcgaggcttcgatcaga
gagtactttttcggcaacatcgggcgaactctaagtcctgcgactcagcaggtcgatttt
gatagcctcaccatttacagactgggtgactactcggtgtacggcaacggggacgagggt
ctcatgctgtccgagccatcaggcctcatggcgcattggactttggctgtcatgtacgcc
tctaccaaggattcgcctgagaccattcgcaacgcgaacgtcatggggtatgtttacgtc
gccgaagttgacaaagagaggcgcaaaatgaaagttctcgcgcccgtcagcggacgattg
ggtgatcgccctctactctggggcaagtggccggaaccattcgtcaacttattgggttaa
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