Verticillium alfalfae: VDBG_07870
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Entry
VDBG_07870 CDS
T02227
Name
(RefSeq) hypothetical protein
KO
K09291
nucleoprotein TPR
Organism
val
Verticillium alfalfae
Pathway
val03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
VDBG_07870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
val03019
]
VDBG_07870
Messenger RNA biogenesis [BR:
val03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
VDBG_07870
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
9529666
NCBI-ProteinID:
XP_003001611
UniProt:
C9SSJ5
LinkDB
All DBs
AA seq
2050 aa
AA seq
DB search
MAAAAVDTGRIAGHLGLAESAVNTITTDPTPELVASFLQALVAKADEFDEVYNAKLMLEV
ELESAHRNAEERCRNAKATADKALKDVEEIRQKLHEEETKRQNVENELQSLKSRGSDHDS
EITTLRDRIESLQSSNRANMALLESRNARDSELSDELAKQHQKNVQLNKEITSLQTSLQA
AQAAASSAKYREDSVQQQLDLARRNGEWFENELKTKSEEALKYRKEKGARIAELQRQNED
AKSETEALKRSEQQLRDRLDAARAKAEEALTKLQQQQEAFARTEESYKHELESKQRLVDM
ANQLTNNHKTRVQQLEGERESLNQKHVNDIKRLQQQLEQEKENCRILEERVGQLEGEIDE
LQVRMEQAPQPASAPSAPSTPRPNGSLAVRAASPFATPGSVRSRTAITATQAIEELYKVK
GQLAGEKRRNQQLAEELDNMISVLEAKTPEIEELQAETDALRAEITKMSQLSEQSYEERD
AAKKSARKAESALSTTRRRPRSSATSSATSAPRSKCLCSTCTPARRVLSSLPERKPSGSN
SCLEELQEKNQELLRVTRDLADKMENEEARAAKDQAAHDSKLVDELKTQLANLVDERQSL
RTTTESFKTERDMFRRLLQQKNVSGELDSILGSPINDGQRHPLVSIEDEQGDSVSPQVAL
RDLQAQFDSYRDDAEAVRQSLRDQVDKVSGEKNALQAEVAKISSQLTLATERYEMLHSNF
VALQTDNKELQKRSQVLSEGAAKQDIRTQQVAEELIEARGLVESMRNETANLKAEKKLWK
DIQDRLNQDNESLVQEKARLNGLLATHQSLQNERDISESEARRKSQSRIESLESELSDTK
RKLSEEVEEGKKLQLRKEFDAREAQKRIDELSGNLSQIREEHVAVKTSRDHLQARVDELT
IELRSAEERYGRLQPRPTPRPGSFAAETTQPDHDNESEVRELINEVADLKRDLELARAHL
ENAKEQAEQYKNLSEENEKALSEFTDSQEQFQHEIETTLQAKDAKIKELEQRVEDVSAEL
ANSNKELSALRDAQGEVARKFEDEKKILEEELERLKATAERHSEAAKHHRDDMRLQQEIT
TGIQRDYEHELMKHAEAAQQAQQLRAEYNQLKSQTATLRAEAESAKVTLAQSQGSWEDRR
QHLEQEIAELKARRDDANAQNKLLHQQLESVTAQFSALKQNRTSTIDNADSPEGGGSSDN
AIDGLRELNSYLQREKDILEVQYDLKVQESKRLQQQLTYSQSQLEETRLKLDQERRTAAE
SGQSSLAHKDLMEKINELNLYRESSATLRNELTQSRAQIAEKNAKIEELEGKVQPLEAKI
EEIETQKGFLEEEIKQIQEDRDRWQKRTEGMFTKYGRVDPAEMDQLKQTVTDLEAERDAL
KEAEAPLRSQLDEIQKALDGERSNWQNTRQKLTEQFKERSKKLSGDKNEAIAERNNIQAQ
LDAVKSELEQVKNELGASSTQDEQVRQLQEQLNAANNEVQRIQQELEASSSQKSQYEQQI
SSFQQQVQRLQLEAQASQSTPTQPSAANTDPSGSASADVVAQLEQNLANLRNELENMTAQ
KQSATQELESLRSELQSAVSARDEAQKKASELAQRQSETADASQASVESGGVTAQTVHNT
LSDEERKALEDKIVAAEAKASEYETKASECEAKMKAIEESQNQTLKERSDKMKNALNDRL
RQDRQKLEQEFQTRVDQEKIIWQAEHPAAAPSQEQPIASTPVKKQEPEPPSNTPTANAPL
SDGEVRKLLATNPTAKSIFTANLKKKLEEHSAKAETTLKAEYESKISTAREEGQALAQKK
SALQINMRDNQVRAANAKLEVVSTAAANTPARPVGEVWEEAKVAKPAPAPAAQPTPARAP
ANAQINNTPRVASGSPAPAPATAPTNNSGKSKSSQLSSASTYSAIATPSKPPPAQVTATG
QKPVTAAASGIPQPPGQKAAVATTGEAPTTTPAAANPFAASGTPPVCPRTRSPMLLQQTQ
QRRQQQGRLSQINLRSEVESQSPVAAVLPDEEAVARIKHPANVCRLVVRTSEGDFPAEVA
AAADTSREAP
NT seq
6153 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagctgctgtagacactggaaggatagctggccacctgggccttgctgaatcc
gctgtgaacaccatcaccaccgatccaacgccggagctcgtcgcatccttccttcaagcc
ttggttgccaaggcggatgagtttgatgaagtatacaatgccaagctcatgctcgaggtc
gagttggagagcgcacaccgcaatgccgaagagagatgccgaaacgccaaagcgaccgcc
gacaaagcgctaaaggacgtcgaggagatacgccagaaactccacgaagaagagacgaaa
cgccaaaatgtcgaaaacgagctgcaatccctcaagtcaaggggatccgaccacgactcc
gagatcacgaccttgcgcgatcgcatcgaatccctgcagtcttcaaacagggctaacatg
gcactcctagaatcacgcaatgcgcgcgattctgagctgtccgacgagctcgccaagcag
caccagaagaacgttcagctcaacaaggaaatcacatccctccagacttcgctccaagcc
gctcaggcagccgccagcagcgccaagtaccgcgaggactctgttcagcaacaactcgat
ctcgcccggcgcaacggcgagtggtttgaaaatgaactcaagacgaagagcgaggaggct
ttgaagtaccgcaaggaaaagggagcgcgcatcgctgaactgcagcgtcagaacgaagat
gccaagtccgagaccgaagccctcaaacgaagcgaacagcaactgcgtgatcgtcttgat
gcggcgcgggccaaggccgaagaggccctcaccaagctgcagcaacaacaggaagctttc
gcgcgcactgaagagagctacaagcatgagctggagagcaaacaacgcctcgtcgatatg
gccaaccagctgacgaacaaccacaagacgcgcgttcagcaactcgagggcgagcgcgaa
agcctcaatcagaagcacgtcaatgatatcaagcgccttcagcagcagctcgagcaggag
aaggagaactgtcgtatcctagaagaacgcgttggtcaactcgagggagagattgacgaa
ctacaggtgcgcatggaacaagcgcctcagcctgcgtcagctccctccgccccttccact
ccacgccccaacggttcactcgctgtccgagccgcgtcgcctttcgcgaccccgggctct
gtccgcagcaggactgccatcacggccactcaggcgatcgaggagctgtacaaggtgaag
ggacagctcgccggcgagaaacgacggaaccagcaattggcagaagaactcgacaacatg
atttcggttctagaagccaagacacccgaaatcgaggaacttcaagccgaaaccgatgct
ttgagggctgagatcaccaagatgtcacagctgtcagaacagagctacgaggagcgcgat
gccgccaagaagtcagctcgcaaggctgagagcgccctctctaccacaaggcggaggccc
agatcctccgcaaccagctccgcgacctcagcacccagatccaaatgcttgtgttcaaca
tgcacgcccgcgagaagggtcttgagcagcttacccgagaggaaaccctcaggctcgaac
agctgtctcgaggagctgcaggagaagaaccaggaactacttcgggtcacccgagacctt
gccgacaagatggaaaatgaagaagctcgtgcggcaaaggaccaggcggcccacgacagc
aaacttgtggacgaactcaagacgcagctcgccaatctcgtagatgaacgccaatccctg
cgcacaacgacagaaagtttcaagaccgagcgcgatatgttccgtcgcttgttgcaacag
aagaacgtttccggcgagctggattcgattcttggcagccccatcaacgatggacagcgt
caccctcttgttagtatcgaggatgagcagggtgatagtgtgtcacctcaggtggcattg
cgagaccttcaggctcagtttgactcgtaccgcgatgatgctgaggctgtcagacagtct
cttcgggaccaggttgacaaggtgtctggggagaagaacgctctgcaggcagaggtagcc
aagatttccagtcagctcaccctggctaccgagagatacgagatgctgcattccaacttt
gtggcactccagaccgataacaaagaactgcagaagcgttcccaggtgctttccgaaggc
gctgccaagcaggacattcgcacacagcaggttgcggaggaacttatcgaggcgcgtggt
ctcgtcgaaagcatgcgcaatgaaacggcgaacctcaaggcagaaaagaaactgtggaag
gatattcaggaccgactcaaccaggacaacgaaagcctcgtgcaggaaaaggcccgactc
aatggtctccttgccacgcaccaatctcttcagaacgaacgcgacatcagcgaatccgaa
gcacgccgcaagtctcagtccaggattgagagcctggagtccgagctctctgatacgaag
cggaagctgtccgaagaggttgaagagggaaagaagctgcagctgaggaaggagtttgat
gctagggaggcacaaaagcgaatcgatgagctctctggcaacctgagccaaattcgcgaa
gagcacgtcgccgtaaagacgagccgcgatcatctacaggcccgagtggacgaattgacg
atcgagcttcgtagcgctgaggagcggtacggtcgtctgcaacctcgtccgacaccccga
cccggcagtttcgccgccgagacgacgcaacccgaccacgacaacgagagtgaagtccgt
gagctcatcaacgaagtcgccgatctcaagcgcgacctcgagcttgcccgtgctcacttg
gagaatgcaaaggagcaggctgagcaatacaagaacctcagcgaagagaacgagaaggcg
ttgtccgagttcactgattcgcaggagcagttccagcacgagatcgagacgactctacag
gctaaggacgcgaagatcaaggaacttgagcagcgtgttgaagatgtgtctgctgagctg
gccaactctaacaaggagctctcggctctcagagacgcacaaggcgaggtggctcgcaag
ttcgaggacgagaagaagattctcgaggaagaactcgagaggctcaaggcgaccgctgag
cgccattcggaagctgccaagcatcatcgagacgacatgcgtcttcagcaagaaattacg
accggaattcagagagactatgagcatgagctgatgaagcatgccgaggccgcgcagcaa
gcgcagcagctgcgcgccgagtacaaccagctcaagagtcaaacagcaactctgagggcc
gaagccgaatcggccaaggtcacccttgcgcagtctcaaggctcatgggaagacaggcga
cagcacctagagcaggagattgccgaactcaaggctcgtcgtgatgacgccaacgcgcag
aataagctcctacatcaacagcttgagagtgttactgcacagttttccgcgctcaagcag
aaccggacatcgaccatcgacaatgcggactctcccgagggaggagggtcttccgacaac
gccatcgacggcctgcgtgaactcaactcgtacctgcagcgcgagaaggacattctcgaa
gtccagtacgacctcaaggtgcaagagtcgaagaggctgcagcagcagctcacctactca
cagtcacaattggaagagacacgtctcaagctcgaccaggaacgccgaaccgcagccgag
agtggccagagttccctcgctcacaaagaccttatggagaagatcaacgagctcaacctt
taccgcgaaagcagtgccactctacgcaatgagctcacgcagtccagagcccagattgcc
gagaagaacgccaagattgaggagcttgaaggcaaggtccaaccgttggaggccaagatt
gaggagattgaaacgcagaagggcttcctcgaggaagagatcaagcagatccaggaggac
cgcgaccgttggcaaaagcgcaccgagggcatgttcaccaaatacggccgtgtcgacccc
gccgagatggatcagctcaagcagacggtcaccgaccttgaggccgaacgcgatgctctc
aaggaggccgaagctcccctgcggtcacagctggatgagatccaaaaggctctggatgga
gagcggagcaactggcagaacacacgccagaaactcacggagcagttcaaggagcgatca
aagaagctctcgggtgacaagaatgaggcgatcgcagagaggaacaacatccaggctcaa
ctggatgctgtcaagtccgaacttgagcaggtcaagaatgagctgggcgcttcgagcaca
caggatgagcaggtgcgacagctccaggaacagctgaacgcagcgaacaacgaagtgcaa
cggatccagcaagagctcgaggcttcatcgtcgcagaagtctcagtacgaacaacagatt
tcgtcgttccagcaacaagttcagcgtctacagctggaggcccaggcgagccaatcgaca
cccactcagccgtcagcagcgaacaccgacccgtcgggctccgcttccgcagatgtggtt
gcgcagttggagcagaacctggcgaatctgcgcaatgagctcgaaaacatgacagcgcag
aagcaatctgccacacaagagctcgagagcctgcgttccgagttgcagagtgccgtctcg
gccagagacgaggcgcagaagaaggccagcgagctggctcagcgacaaagcgaaaccgcc
gatgcatcgcaagcgtctgtcgagtctggcggtgttaccgcccagactgtgcacaacacc
ctgtcagatgaggagcgcaaggcactagaggacaagatcgttgcggctgaagccaaggct
tctgaatatgagactaaggcatccgagtgcgaagccaagatgaaggccatcgaggaaagt
cagaatcaaacgcttaaggagcgatccgacaagatgaaaaacgctctgaatgataggctg
cgccaagacaggcagaaattggagcaggaattccagaccagagtcgaccaggagaagatt
atctggcaggcagaacaccctgccgctgcgccctcccaggaacagcctatcgcctcgaca
ccggtcaagaaacaagagcccgagccgccatcaaacacaccgaccgcaaacgctccactt
tctgatggcgaggtacggaaacttctcgcaaccaaccccactgctaagagcatctttacc
gcaaaccttaagaagaagcttgaggagcactcggccaaagcagagactacgctcaaggcg
gaatacgagtcgaagatttcaacagcgagggaggaaggccaggcactcgcgcagaagaag
tcagccctgcagatcaacatgagagacaaccaggtcagggcagcaaacgctaaactggag
gttgtttccacagccgcggccaacacacccgccaggccagttggcgaggtctgggaagag
gcaaaggtggctaagcccgcgcctgcgcctgccgctcagccaactcctgcgcgtgctccg
gctaatgcccagatcaacaacacgcctcgcgttgcttctggatcgcctgcgcctgcgccg
gcgactgctccgacaaataattctggtaagtccaagtcatcacaactgagcagtgcatct
acttactctgctatagccactccgagcaagccaccgccggcacaggtgacagcgactgga
cagaagccggtgacggcagctgccagcggcattcctcagccaccaggccagaaggccgca
gtcgccaccactggcgaagcgccgacaaccacaccagccgcggcaaatccttttgctgcc
agcggaacgcctccagtctgcccgcgaacccgttcgccaatgctgctacagcaaacgcaa
cagcgacgacaacaacagggcaggctcagccaaatcaacctacggtcagaagtggaatcc
cagtccccggtcgcggcggtgctgccggacgaggaggccgtggcacgtatcaaacacccg
gccaacgtgtgtcgactggtggtccgaacgagcgagggggattttccggccgaggtcgcg
gccgcggcggacaccagcagggaggcgccttga
DBGET
integrated database retrieval system