Variovorax sp. PMC12: C4F17_01560
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Entry
C4F17_01560 CDS
T05380
Symbol
pcaB
Name
(GenBank) 3-carboxy-cis,cis-muconate cycloisomerase
KO
K01857
3-carboxy-cis,cis-muconate cycloisomerase [EC:
5.5.1.2
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00362
Benzoate degradation
vam01100
Metabolic pathways
vam01120
Microbial metabolism in diverse environments
vam01220
Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
C4F17_01560 (pcaB)
Enzymes [BR:
vam01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.2 3-carboxy-cis,cis-muconate cycloisomerase
C4F17_01560 (pcaB)
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GFIT
Motif
Pfam:
Lyase_1
Motif
Other DBs
NCBI-ProteinID:
AVQ79739
UniProt:
A0A2P1V3P0
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All DBs
Position
1:348479..349690
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AA seq
403 aa
AA seq
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MSIFEGFLSTSETLGAFSDRAFVDAMLRFEAALARAQAAEGLIPESAAHSIVSSCKVELF
DVAKIVRESGRAGSVAIPLVKALREAVSLFNAEAAPYVHFGSTSQDVIDSAMALVTREAV
ALVEADLARAADALMRLATEHAETPMLARTLMQPASVTSFGFKCAGWAAPLVRSRLRLRE
AAKHALQLQLGGAVGTLAQMKGQGAAVRQRMAKELGLGDPGATWHTQRDEWVALGCELGL
MTGSLGKIAVDIALLGQYEVAEVSEPSEPGRGGSSAMPHKRNPVASMVAIAAAHRAPQRV
AALLGAMPQQHERALGAWQAELAEWPQLLMSAHGSVRAMAGALPGLQVDAARMRANIDRL
RAELPRDAADEWFDPALAMNAGQTALAEVKAMQARLTDKELAQ
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgagcattttcgaaggctttctctccacatccgaaacgctgggcgcgttcagcgaccgc
gcgttcgtcgacgcgatgctgcgcttcgaggccgcgctggcgcgtgcccaggccgccgag
gggctgattcccgagagcgccgcgcactccatcgtgagcagctgcaaggtcgagctgttc
gacgttgccaagatcgtccgcgagagcggccgtgccggcagcgtcgccattccgctggtc
aaggcgctgcgcgaggccgtgagccttttcaacgccgaggccgcgccttatgtgcatttc
ggcagcaccagccaggacgtgatcgacagcgcgatggcgctggtcacgcgcgaggcggtc
gcgctggtcgaagccgacctggccagggcggccgatgccctgatgcgccttgcgacggag
catgcggaaacccccatgctcgcgcgcacgctgatgcagccggcttcggtcaccagcttc
ggcttcaagtgcgccggctgggccgcgccgctggtgcgcagccgcctgcgcctgcgcgag
gccgcgaagcacgcgctgcagttgcagctcggcggcgccgtcggcacgctcgcgcagatg
aaggggcagggcgcggccgtgcgccagcgcatggccaaggaactgggcctgggcgacccc
ggcgcgacgtggcacacgcagcgcgacgaatgggtggcgctgggctgcgagctgggcctc
atgacgggcagcctcggcaagatcgcggtcgacatcgcgctgctgggccagtacgaagtg
gccgaagtctccgagcccagcgaacccggccggggcggctcgtcggccatgccgcacaag
cgcaacccggtggcgtcgatggtggccattgccgccgcccatcgcgcgccgcagcgcgtg
gccgccttgctcggcgccatgccgcaacagcacgaacgcgcgctcggcgcctggcaggcc
gagctggccgaatggccgcaactgctgatgtcggcgcacggcagcgtgcgcgccatggcc
ggtgcgctgccgggcctgcaggtcgacgccgcgcgcatgcgcgccaacatcgaccggctg
cgcgccgaactcccgcgcgacgcggccgacgaatggttcgaccccgcgctcgccatgaac
gccggacagaccgccctcgccgaagtgaaggcgatgcaggcccggctcacagacaaggaa
ctcgcccaatga
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