Variovorax sp. PMC12: C4F17_17250
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Entry
C4F17_17250 CDS
T05380
Symbol
tet
Name
(GenBank) Tet(A)/Tet(B)/Tet(C) family tetracycline efflux MFS transporter
KO
K08151
MFS transporter, DHA1 family, tetracycline resistance protein
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_17250 (tet)
01504 Antimicrobial resistance genes [BR:
vam01504
]
C4F17_17250 (tet)
Transporters [BR:
vam02000
]
Major facilitator superfamily (MFS)
Drug transporters
Drug:H+ antiporter-1 (12 spanner) (DHA1) family [TC:
2.A.1.2
]
C4F17_17250 (tet)
Antimicrobial resistance genes [BR:
vam01504
]
Gene variants
Tetracycline resistance genes
Transporters
C4F17_17250 (tet)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFS_1
Sugar_tr
ATG22
MFS_1_like
TRI12
Motif
Other DBs
NCBI-ProteinID:
AVQ82558
LinkDB
All DBs
Position
1:complement(3732975..3734207)
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AA seq
410 aa
AA seq
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MINSTTLPTPSAAKGRHAHVVILAIVTLDAIGISLVMPIVPGLLREVGHTGDLGWRFGAF
LSLYALMQFLCAPVLGALSDRFGRRPVLLISVAGAAIDALFMAFAPSLWMLFVGRAIAGM
TGASTAVASAAIADLTPENQRARWFGRMGACFGLGFIAGPAIGGVLGDHGVRLPFIAAAV
LNGVTFLVGLLVLRESRPPALATKPFDRGVLHPLAPLRWANSFPALLPLLGVFLLLVLVG
EVAGTTWVIYGQDRYAWNGTMVGLSLAVFGLLHALVQGFVAGPVVERWGERAAIAIGTIA
DGTGYALIAFATQGWMAIAMLPLLCMGGVCAPALQATLSARVGEAQQGRLQGVLASITSL
AAVFGPLLISPLYFAFRTRFPGIVWLAGASLYLLCLPVLLRRTGRTGAQG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgataaattccaccacgctcccaacgccttccgccgcgaagggccgccatgcgcatgtc
gtgatcctggcgatcgtcacgctcgacgccatcggcatcagcctggtcatgccgatcgtg
ccgggcctgctgcgcgaggtcggccacaccggcgatctcggctggcgcttcggcgcattt
ctctcgctctacgcgctgatgcagttcctctgcgcacccgtgctcggcgcgctcagcgac
cgcttcggccgccggccggtgctgctcatctcggtggcgggcgccgccatcgacgcgctc
ttcatggccttcgcgccctcgctgtggatgctgttcgtgggccgcgccatcgcgggcatg
acgggcgcgagcaccgccgtggcctcagccgccatcgccgacctcacgcccgagaaccag
cgcgcgcgctggttcggccgcatgggcgcctgcttcggactgggcttcatcgccgggccc
gccatcggcggcgtgctcggcgaccacggcgtgcggctgccgttcatcgcggctgcggtg
ctcaacggcgtgaccttcctcgtcggcctgctggtgctgcgcgagtcgcgcccgccggcg
ctcgccacaaaaccgttcgaccgcggcgtgctgcatccgctcgcgccgctgcgctgggcc
aacagctttccggcgctgctgccccttctcggcgtgttcctgctgctggtgcttgtgggc
gaggtcgccggcacgacctgggtgatctacggccaggaccgctacgcctggaacggcacc
atggtcggcctctcgctcgcggtgttcggcctgctgcatgcgctggtgcagggcttcgtc
gcggggccggtggtcgagcgctggggcgagcgcgcggccatcgccatcggcaccatcgcc
gacggcacaggctatgcgctgatcgccttcgccacgcagggctggatggcgatcgcgatg
ctgccgctcctgtgcatgggcggcgtctgcgcgccagcgctgcaggcgacgctctcggcg
cgcgtgggcgaggcgcagcaggggcggctgcagggcgtgctcgcgagcatcaccagcctg
gcggcggtgttcggcccgctgctcatcagcccgctctacttcgcgttccgcacgcgtttc
cccggcatcgtgtggctggcgggcgcgtcgctctatctgctgtgcctgccggtgctgctg
cgcaggactggcagaaccggcgcgcagggctga
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