Vigna angularis (adzuki bean): 108326051
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Entry
108326051 CDS
T04660
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108326051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108326051
Enzymes [BR:
var01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
108326051
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108326051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
SRPRB
AAA_22
ABC_tran
ATP_bind_1
FtsK_SpoIIIE
AAA_29
Motif
Other DBs
NCBI-GeneID:
108326051
NCBI-ProteinID:
XP_017414784
UniProt:
A0A0L9U155
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Position
2:complement(35056544..35060360)
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AA seq
438 aa
AA seq
DB search
MAYGGAGPVGGSGSASTIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIW
LNFPPRLKFAVFTWFGATIEMDGATETDYTADETPMVSYVNVHAILDGRRSRAKASSPDD
FESSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPI
EMPIDPVEGIPLEMPLVYFYGHATPSNNVELYKVLVKELSGMIERQFTGNAESRASGMVI
NTMGWIEGVGYDLLLHAIRTFKANVVLVLGQEKLCSMLKDVLKSEPKVDVVKLQRSGGVV
SRNAKVRQKARSYRIREYFYGLSNDLSPHSNIANFSDLFVYRVGGGPQAPRSALPIGAEP
AADPTRVVPVNINRDLLHLVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLAPSS
GELPSKYLIMGSLTWLET
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcttacggtggtgcaggtcctgtgggtggttcgggatctgcatccaccattaagcaa
gtgaaattggagagagaaagcgaactcagaatagaagtgggtaacgacgcaccacttcgc
cttcgtctccttaacggaactgctgaaattttcggcaccgagcttcctcccgaaatctgg
ctcaatttccctcccagactcaagttcgctgtgtttacttggtttggtgcgaccattgaa
atggacggagctactgaaactgattacactgccgatgagactcccatggtaagctatgta
aatgtgcatgccatactggatggaagaagaagtcgtgccaaagcttcatcacctgatgat
tttgaatcttctcagggtcctagggtcattgttgtagggcctactgattctggaaagagt
accttgtccaggatgcttcttagttgggcggctaaacaaggttggaaacctacctttgtt
gacttggatattggccaaggctctataacaattcctggatgcattgctgccactccaatt
gaaatgcccattgatcctgtggaaggtattccacttgaaatgcctcttgtatacttttac
gggcatgcaactccaagcaacaacgtagaattgtataaagtgcttgtcaaggagctttca
gggatgattgagagacaatttactggaaatgctgaatctcgagcttcgggcatggtgata
aatactatgggatggatagaaggagtaggctatgatttgctcttgcatgcaattcgtaca
ttcaaggccaatgttgtcttggttttaggtcaggaaaaattgtgcagcatgctcaaagat
gtgcttaagagtgagcccaaagtagatgttgtgaaacttcagaggtcaggtggagttgta
tctaggaatgcaaaagtcagacagaaggccagaagttacaggataagggaatacttctat
ggcctttcaaatgatctttctccacattctaatattgcaaattttagtgatttgtttgtt
tatcgagttggtggtgggccacaggccccacggtcagccttgccaattggagcggaacct
gctgcagatccaacaagagttgtacctgtaaacataaatcgtgatttgctccatcttgtc
cttgctgtctcatttgccaaggaacctgatgagatcatttccagcaatgttgccgggttc
atttatgtaacagacattgatattcagagaaagaagataacataccttgctccgtcttct
ggagagcttccaagcaagtatttgataatgggatccttgacatggcttgaaacatga
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