Varibaculum cambriense: CYK25_000460
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Entry
CYK25_000460 CDS
T09090
Name
(GenBank) RNA degradosome polyphosphate kinase
KO
K00937
polyphosphate kinase [EC:
2.7.4.1
]
Organism
vcb
Varibaculum cambriense
Pathway
vcb00190
Oxidative phosphorylation
vcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09100 Metabolism
09102 Energy metabolism
00190 Oxidative phosphorylation
CYK25_000460
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYK25_000460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcb03019
]
CYK25_000460
Enzymes [BR:
vcb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.4 Phosphotransferases with a phosphate group as acceptor
2.7.4.1 ATP-polyphosphate phosphotransferase
CYK25_000460
Messenger RNA biogenesis [BR:
vcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CYK25_000460
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PP_kinase_C_1
PP_kinase_C
PP_kinase
PP_kinase_N
PLDc_2
RE_NgoFVII
AcetylCoA_hyd_C
Motif
Other DBs
NCBI-ProteinID:
WIK88740
LinkDB
All DBs
Position
complement(111466..113535)
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AA seq
689 aa
AA seq
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MQFNQRVLEQAEDERLPILERAWFTTIFSSNLDEFYMVRVAGLKRRIAAGIARTAASGLT
PRQVLDLVTERAQVLCARQAGFVQNTLLGELEEVGIKLRRWDDLAPEQQDFLHGYFRRQI
FPILTPLAVDPSHPFPYISGLSVNLAVVVRNPLTGKQHFARVKIPESLPRLICVEQAINQ
VSPEDAIDTNGEATFITLEDVIGPHLDHLFPGMEILEHHVFRLTRNEDLEVEEDDAENLL
TAMEQELLRRRFGPAVRLEVAEGISRPVLDFLVAKLEIGMEDVFALPEPIDLRCLNELHE
LDLPELKYQKFVPATAAGLAEVESATPTDIFAMIRSHDVLLHHPYDSFSTSVQHFVTYAA
RDPKVRSLKQTLYRTSSDSPIVSALIEAAQNGKQVLAIVEIKARFDEDANISWARKLERA
GVHVVYGMVGLKTHCKLSMVVREESDGLRRYCHVGTGNYHPKTARGYEDLGLLTCDREVA
QDLTRLFNQLSGYAPRTSFHRLLVAPRSIRPGIIERIEREVENHRKGLPAYIGIKVNSLV
DEAVTDALYRASQAGVPIDIVVRGICTIRSGVRGLSENIRVRSILGRFLEHSRIYAFENA
GQPEVWIGSADLMHRNLDRRVEALIRIKDPDMTAELMDLVKLEASPEVSSWHLRRDGTWR
RHVDAKDGSPLMDIQEYLINKANSRMKGR
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcagttcaaccaacgggtattagagcaggcagaggacgaacggctcccaattctagag
cgcgcctggttcactacgattttctcttctaaccttgatgaattctatatggtgcgggtg
gccggactaaaacgccggattgccgccggaattgcccgtactgccgcctccggactcacc
ccccggcaggtacttgacctggtgactgaacgtgcccaagttctgtgtgcgcggcaagcc
ggtttcgtacaaaacactttgctaggcgaactggaagaggtgggaatcaaactgcgacgc
tgggatgatcttgccccggagcaacaagattttctgcatggatatttccgccgccaaatt
ttccccatccttactcccttggcagtcgacccctctcaccctttcccctatatttcgggg
ctgtcagttaacttggcggtagtggtacgcaatcccctaactggaaagcagcatttcgcc
cgggtaaagatcccggaaagcctgccccgattaatctgcgtggaacaggcaataaaccag
gtcagcccggaagacgcgattgatactaacggggaagccaccttcattaccctggaagat
gttatcggcccccacctcgatcaccttttcccgggaatggaaatcttggaacaccacgtg
ttccgcctgacccgcaacgaggatctggaagtcgaagaggacgacgccgagaacctgctg
accgcgatggaacaggaactgttgcggcgccgtttcggcccggcagtccgcttagaggtt
gccgaaggaatctcgcgcccggtattagactttttggtggccaaactggagatcggcatg
gaggacgtttttgcgcttccggaaccgattgacctgcgctgcctgaatgagcttcatgaa
ctggatttgccggaactgaagtaccagaagtttgttccggctactgctgccgggttagcg
gaagtggaatcggctacccccaccgatattttcgcaatgatccgcagccacgatgtgttg
ctgcatcacccctatgattccttctctacctcggtgcaacattttgtcacctatgccgct
agagatccgaaagtgcgttccctcaagcaaaccttgtatcgtacttcctcggattctccg
attgtgtctgccctgatagaggcggcgcaaaacggaaaacaggtgcttgccatcgtagag
attaaagctcgtttcgacgaggacgccaatatctcttgggcacgcaaactagagcgcgcc
ggggtgcacgtggtttatggcatggtggggctgaaaactcactgcaaactatcgatggtg
gttcgcgaagaatctgatgggctgcgccgttactgccacgttggtaccggaaactatcac
cccaagaccgcccgcggatacgaggatctgggcttgctgacctgcgatcgcgaggtagct
caagacctcactcgcctatttaatcagctgtcggggtatgcaccgcgtacttccttccat
cgcctgctggtggctccgcgctctatccgtccgggcattattgaacgtattgagcgcgag
gtagaaaatcaccgcaaagggttgcccgcctatatcggaattaaagtaaactccctggta
gatgaggcggtaactgatgctctctaccgcgccagccaggcaggcgtgcctatcgatatt
gtggtgcgcggaatttgtacgattcgttccggggtgcgcggcctatcggaaaatatccga
gtgcgctccattttagggcgtttcctggagcactcacggatttatgcctttgaaaatgcc
ggacagccggaagtttggatcggttctgctgacctgatgcaccgcaacctggatcgccgg
gtagaggcgctgattcggattaaggatcccgacatgaccgccgaactcatggacttggtg
aaacttgaggcctccccggaggtatcttcttggcatttacggcgggatggtacttggcgg
cgccatgttgacgccaaggatggatcgccgctgatggatattcaggagtacctaattaat
aaggctaactcgcggatgaaaggacgctaa
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