Vibrio cholerae O1 El Tor FJ147: IR04_03415
Help
Entry
IR04_03415 CDS
T03827
Name
(GenBank) diguanylate cyclase
KO
K20962
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Pathway
vcf05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
IR04_03415
Enzymes [BR:
vcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
IR04_03415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAF
GAF_2
GAF_3
Motif
Other DBs
NCBI-ProteinID:
AJZ98270
LinkDB
All DBs
Position
II:703091..704974
Genome browser
AA seq
627 aa
AA seq
DB search
MAPILSHSIPIPSSMQANWQQMLNLLAEVLKVSATLIMRLRHHDLDVFCTSVGSDNPYQV
GMTERLGTGLYCETVVNTRQILLVSNADLDPLWKDNPDLELGMRAYCGVPLQWPNGELFG
SLCVTDRQARQFLSTDQQLIKTFAESIEAQLKTLYQRETLLQMNQDLHFKVRHKMQSIAS
LNQSLHQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQLAMQLAQLAEHEELAVIHIG
FANARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQ
LCHRLIHAGQAQFVTEGLPVHLNPYIGVALSRETRDPQQLLRHAVSSMLACKDSGYKVFF
HSPALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEF
SNETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVCPTFCIAINVSSVQLKNSGFVEQI
RDLLALYCFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK
KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC
DVGQGFLYGKPMPSEVFTLKLESHALA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgatcctttcacactcgatcccgatcccttctagcatgcaggcaaattggcag
cagatgctcaacctgctggccgaagtgctgaaagtctcagccaccctgatcatgcgttta
cgccatcacgatcttgatgtgttttgtaccagtgtcggcagtgacaatccataccaagtc
ggcatgaccgaacgattaggcacaggcttgtattgtgaaactgtggtcaatactcgccag
atattgttagtcagtaacgccgacctcgacccattgtggaaggataacccagatctggaa
ttgggcatgcgcgcttactgtggcgtaccattgcaatggccaaacggtgagctttttgga
tctttgtgtgtcaccgatcgtcaagctcgccagtttcttagtaccgatcagcaattgata
aaaacctttgctgaatcgattgaagctcagcttaaaaccctttaccaacgcgaaacgttg
ttgcaaatgaaccaagatttgcacttcaaagttcgtcataaaatgcaaagcatcgcctcg
ctgaaccaatctctccatcaagagatcgataaacgccgtgccgcagaacagcagattgag
tatcagcgcagtcacgaccttgggactggctttctgaatcgcacggcattggagcagcag
ctcgcgatgcagctggctcaattggcggaacacgaagagctcgctgtgattcatatcggt
tttgccaatgcccgccaattacaggcgcggctgggttaccacctttgggatgatgtgcta
aagcagttacgtgagcgacttggtccggtgacggagggggaattactgaccgctcgccct
aactcgaccaatttgacgctgatcttaaaagcccatccgctcgacacccaattaaatcag
ctttgccatcgtttaattcacgctgggcaagcgcaatttgtgacggaggggctgcccgtt
cacctcaacccttatattggtgtggcccttagccgtgaaacacgcgatccgcagcagcta
ctgcgccatgccgtcagcagcatgttggcgtgtaaggactcgggatacaaagtgtttttt
cactctcccgcattagccgataaccatgcacggcaaaatcaattggaaaactatttactg
caagcggtgcgcaacaacgatctgctgctctacttccaacctaaagtcagcatgaaaacc
cagcgctgggtcggtgctgaggcattgttgcgttggaagcatccggtgttgggtgaattt
tccaatgaaaccttgattcatatggcagagcaaaatggtcttatctttgaagtggggcat
tttgttttgcaccaagctttaaaagccgccagtgattggttagcggtgtgcccaaccttt
tgtatcgcgatcaatgtctcttccgtacagctcaaaaacagtggctttgtcgagcagatt
cgagatctgctggcgctgtattgcttccctgcgcatcagttggaactggaaatcaccgaa
agtggcctgatcgtcgatgagccgaccgcgagtgatattctcaaccgactacacacatta
ggcgtgacattatcactcgatgattttggtacgggttacgcttcgtttcagtatctaaaa
aaattcccatttgatggcatcaagattgataaaagttttatggagcagatcgaacacagc
gaaagcgatcaagaaatcgtgcgttctatgctgcatgtagcgaaaaaactgaacttaaac
gtggtggtggaaggtattgagtcgacgcagcaagagcagttcattctggaacagggttgc
gatgtcggccaaggctttttatatggcaaacctatgcccagtgaagtgtttaccctcaag
ctcgaaagccacgctctggcgtaa
DBGET
integrated database retrieval system
