Vibrio cholerae O1 El Tor FJ147: IR04_13920
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Entry
IR04_13920 CDS
T03827
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
vcf
Vibrio cholerae O1 El Tor FJ147
Pathway
vcf00250
Alanine, aspartate and glutamate metabolism
vcf00310
Lysine degradation
vcf00350
Tyrosine metabolism
vcf00650
Butanoate metabolism
vcf00760
Nicotinate and nicotinamide metabolism
vcf01100
Metabolic pathways
vcf01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
vcf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
IR04_13920 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
IR04_13920 (gabD)
00310 Lysine degradation
IR04_13920 (gabD)
00350 Tyrosine metabolism
IR04_13920 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
IR04_13920 (gabD)
Enzymes [BR:
vcf01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
IR04_13920 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
IR04_13920 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
IR04_13920 (gabD)
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Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
AKA00210
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All DBs
Position
I:complement(1963516..1964967)
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AA seq
483 aa
AA seq
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MLPTDFPFFHQSAFINGQWILGEPQARQTVTNPFDGSLIGSVPLLSAAQVQEAIAGAQAA
QILWCQQPAENKAKILRRWYELIEQHHESLAKLLTIEQGKPLAEARGEIHYAASFVEWYA
EEAKRAYGELIPSHKPDARIMVSRQPVGVVAAITPWNFPAAMITRKCAPAFAAGCAVVLK
PAPDTPFTALALADLAQQAGIPDGLLQVVTGDAIEIGRVLTESKTVRKLSFTGSTGVGKL
LMAQSANNVKKLSLELGGNAPFIVFEDADINAAIDGVMVAKFRNAGQTCVCANRIYVHDA
VYDQFAAKLVDRVSRLNVGYGLDAGVNIGPLINDAAVAKVTSHIVDAQSKGAKVMFGALP
EAGSRLFQPHVLTEVTDEMRVADEETFGPLAALFRFSSEQEVIERANATDSGLAAYCYTQ
SLRRAWHMSEALEAGIVGINEGLISTTLAPFGGIKESGLGREGAKHGLEEYLEVKYTLMG
GLA
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgttaccgaccgattttccattttttcaccaaagcgcctttattaatgggcagtggatt
ttaggtgagccacaggcaaggcaaacggtaaccaatccgtttgatggctccctcattggc
tctgttcctttattgagtgcggctcaggtgcaagaagcgattgccggtgcgcaagcggcg
caaattttatggtgccagcaacccgctgaaaataaagcaaaaattttgcgccgttggtat
gagcttattgaacagcatcatgaatcattggcgaagttattaactattgaacaaggtaaa
ccgctggcagaagccagaggagaaattcactacgccgccagttttgttgaatggtatgcc
gaagaggccaaacgtgcatatggcgagctgatcccatcccataaacctgatgcgcgaatt
atggtttcacgtcagcctgttggcgttgttgccgcgattacgccttggaatttccccgcc
gccatgattacccgtaaatgtgcccctgcctttgcagctggttgcgctgtggttttaaaa
ccagcgccggatacgccgttcacggctttagctttggccgatcttgcgcagcaagcggga
atccctgatggtttattgcaagtggtgacgggcgatgcgattgaaatcgggcgtgtactg
acggaaagcaaaacggtacgcaaactctcatttactggctcaaccggggttggcaagctt
ttgatggcacaatcggccaataacgtgaaaaaactctcgcttgagctgggaggaaatgcg
ccgtttattgtgttcgaagatgcggacattaatgccgcgattgatggtgtgatggtggcg
aaatttcgtaatgctggacaaacttgcgtgtgcgctaaccggatttatgtgcatgacgcg
gtatatgatcaatttgctgccaagttggtggatcgggtcagcagactcaacgtcggttat
ggtttggatgccggtgtaaacatcggtccgctgattaatgatgccgcggttgctaaagtc
acatcacatatagtggatgcccaaagcaaaggagcgaaagtgatgtttggtgcgttgcct
gaagcgggcagccgtttattccagccacacgtgttaaccgaagtgaccgacgaaatgcgc
gttgctgacgaagaaaccttcggccccttggccgcactgtttcgttttagctctgagcaa
gaagtgatcgagcgagccaatgcgaccgattcgggtttggccgcttattgttatacccaa
tctttgcgccgggcatggcatatgagtgaagcacttgaagcggggattgtcggcatcaac
gaagggttgatttccactacgttagcgccttttggtggcatcaaagagtcgggtcttggt
agagaaggggcgaaacacggccttgaagagtaccttgaagtcaaatatacccttatgggt
ggactagcttag
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