Vibrio cholerae O1 M66-2: VCM66_0228
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Entry
VCM66_0228 CDS
T00891
Symbol
rfaD
Name
(GenBank) ADP-L-glycero-D-mannoheptose-6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
vcm
Vibrio cholerae O1 M66-2
Pathway
vcm00540
Lipopolysaccharide biosynthesis
vcm01100
Metabolic pathways
vcm01250
Biosynthesis of nucleotide sugars
Module
vcm_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
vcm00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
VCM66_0228 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
vcm01005
]
VCM66_0228 (rfaD)
Enzymes [BR:
vcm01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
VCM66_0228 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
vcm01005
]
Core region
VCM66_0228 (rfaD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
ThiF
NAD_binding_10
KR
Shikimate_DH
Phage_T7_Capsid
Motif
Other DBs
NCBI-ProteinID:
ACP04559
UniProt:
C3LQK1
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All DBs
Position
I:complement(231131..232075)
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AA seq
314 aa
AA seq
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MIIVTGGAGMIGSNIIKALNERGITDILVVDHLKNGRKFKNLVDLQIADYMDRDDFLAQI
MAGDDFGFIDAIFHEGACSATTEWDGKYVMLNNYEYSKELLHYCLDREIPFLYASSAATY
GETDTFIEEPQYEGALNVYGYSKQQFDNYVRRLWLDAKQHDETLSQITGFRYFNVYGPRE
QHKGSMASVAFHLNNQMNAGENPKLFAGSENFKRDFVYVGDVAAVNLWFLDHGVSGIFNC
GTGKAESFNEVAKAVIAFHGRGEVETIPFPDHLKGAYQEFTEADLTKLRAAGCDVQFKSV
AEGVAEYMALINRK
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgattatcgtaactggcggcgctggcatgattggcagcaacattatcaaagcgcttaat
gagcgcggtatcacagacattctggtcgtcgatcatttgaaaaatggtcgtaagttcaaa
aatctggttgacctacagatcgctgactacatggatcgagatgacttcctagctcagatc
atggccggtgatgattttgggttcattgacgccatttttcatgagggagcttgctctgcg
accacagagtgggatggcaaatatgtcatgctcaacaactatgaatactctaaagagctg
ctgcactactgtttagatcgtgaaatacccttcctgtatgcctcttcagcagccacttat
ggtgaaaccgatacctttattgaagaaccgcaatacgaaggtgcactcaacgtttacggc
tattcgaagcagcaatttgataactatgtacgccgcctatggctagatgcaaaacaacac
gacgaaaccctatcgcaaataacgggatttcgttacttcaacgtatacggccctcgtgag
cagcataaaggctcgatggcttcggttgcctttcatttgaacaatcaaatgaacgcgggt
gaaaatccaaaattgtttgctggcagcgagaacttcaaacgtgatttcgtttatgtcggc
gatgtcgctgcggtcaatttgtggtttttagatcatggcgtatccggcatatttaactgt
ggtactggtaaagcggaatcgttcaacgaagtggcgaaagcggtgatcgcattccatggt
cgcggcgaagtcgaaaccattccattcccagaccatcttaaaggtgcttaccaagagttc
actgaggctgaccttaccaaacttcgcgctgctggctgtgatgtacagttcaagagcgtg
gctgaaggtgtcgctgaatatatggcgctgattaatcgtaagtaa
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