Vibrio cholerae O1 El Tor MS6: MS6_A0830
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Entry
MS6_A0830 CDS
T03666
Name
(GenBank) GGDEF family protein
KO
K20962
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vcs
Vibrio cholerae O1 El Tor MS6
Pathway
vcs05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vcs00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
MS6_A0830
Enzymes [BR:
vcs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
MS6_A0830
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Gene cluster
GFIT
Motif
Pfam:
EAL
GAF
GGDEF
GAF_2
GAF_3
Motif
Other DBs
NCBI-ProteinID:
BAP05089
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All DBs
Position
2:740286..742169
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AA seq
627 aa
AA seq
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MAPILSHSIPIPSSMQANWQQMLDLLAEVLKVSATLIMRLRHHDLDVFCTSVGSDNPYQV
GMTERLGTGLYCETVVNTRQILLVSNADLDPLWKDNPDLELGMRAYCGVPLQWPNGELFG
SLCVTDRQARPFHSTDQQLIKTFAESIEAQLKTLYQRETLLQMNQDLHFKVRHKMQSIAS
LNQSLHQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQLAMQLAQLAEHEELAVIHIG
FANARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQ
LCHRLIHAGQAQFVTEGLPVHLNPYIGVALSRETRDPQQLLRHAVSSMLACKDSGYKVFF
HSPALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEF
SNETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVCPTFCIAINVSSVQLKNSGFVEQI
RDLLALYCFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK
KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC
DVGQGFLYGKPMPSEVFTLKLESHSQA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgatcctttcacactcgatcccgatcccttctagcatgcaggcaaattggcag
cagatgctcgacctgctggccgaagtgctgaaagtctcagccaccctgatcatgcgttta
cgccatcacgatcttgatgtgttttgtacgagtgtcggcagtgacaatccataccaagtc
ggtatgaccgaacgattaggcacaggcttgtattgtgaaactgtggtcaatactcgccag
atattgttggtcagtaacgccgacctcgacccattgtggaaggataacccagatctagaa
ttgggcatgcgcgcttactgtggcgtaccattgcaatggccaaacggtgagctttttgga
tctttgtgtgtcaccgatcgtcaagctcgcccatttcatagtaccgatcagcaattgata
aaaacctttgctgaatcaattgaagctcagcttaaaaccctttaccaacgcgaaacgctg
ttgcaaatgaaccaagatttgcacttcaaagttcgtcataaaatgcaaagcatcgcctcg
ctgaaccaatctctccatcaggagatcgataaacgccgtgccgcagaacagcagattgag
tatcagcgcagtcacgaccttgggactggctttctaaatcgtacggcattagagcagcag
ctcgcgatgcagctggctcaattagcggaacacgaagaactcgccgtaattcatatcggt
tttgccaatgcccgtcaattacaagcgcggctgggttatcacctttgggatgatgtgcta
aagcagttacgtgaacgacttggtccagtgacggagggggaattactgaccgctcgccct
aactcgaccaatttgacgctgatcttaaaagcccatccgctcgacacccaattaaatcag
ctttgccatcgtttaattcacgctgggcaagcgcaatttgtgacggaggggctgcccgtt
cacctcaacccttatattggtgtggcccttagccgtgaaacacgcgatccgcagcagcta
ctgcgccatgccgtcagtagcatgttggcgtgtaaggactcgggatacaaagtgtttttt
cactctcccgcattagctgataaccatgcgcggcaaaatcaattggaaaactatttactg
caagcggtgcgcaacaacgatctgctgctctacttccaacctaaagtcagcatgaaaacc
cagcgctgggtcggtgctgaggcattgttgcgctggaagcatccggtgttgggtgaattt
tccaatgaaaccttgattcatatggcagagcaaaatggtcttatctttgaagtggggcat
tttgttttgcaccaagctttaaaagccgccagtgattggttagcggtgtgcccaaccttt
tgtatcgcgatcaatgtctcttccgtacagctcaaaaacagtggctttgtcgagcagatt
cgagatctgctggcgctgtattgcttccctgcgcatcagttggaactggaaatcaccgaa
agtggcctgatcgtcgatgaaccgaccgcgagtgatattctcaaccgactacacacacta
ggcgtgacattatcactcgatgattttggtacgggttacgcttcgtttcagtatctaaaa
aaattcccatttgatggcatcaagattgataaaagttttatggagcagatcgaacacagc
gaaagcgatcaagaaatcgtgcgttctatgctgcatgtggcgaaaaaactgaacttaaac
gtggtggttgaaggtattgagtcgacgcagcaagagcagttcattctggaacaaggttgc
gatgtcggccaaggctttttatatggcaaacctatgcccagtgaagtgtttaccctcaag
ctcgaaagccactctcaggcgtaa
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