Varroa destructor (honeybee mite): 111248739
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Entry
111248739 CDS
T07383
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
vde
Varroa destructor (honeybee mite)
Pathway
vde03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vde00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111248739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vde03019
]
111248739
Enzymes [BR:
vde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
111248739
Messenger RNA biogenesis [BR:
vde03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111248739
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
TniB
MMR_HSR1
nSTAND3
SRP54
ATP_bind_1
AAA_22
RsgA_GTPase
ABC_tran
CbiA
AAA_35
PduV-EutP
AAA_10
DUF815
Motif
Other DBs
NCBI-GeneID:
111248739
NCBI-ProteinID:
XP_022657342
LinkDB
All DBs
Position
Unknown
AA seq
422 aa
AA seq
DB search
MAVDVEPKQDYKLDKENELRFEVEPPHKVKLELVEGSAEIFGAEIVKDKQYIFSPGCKVA
VFTWYGCTLRIIGITEVAYVSKETPMVVYANIHAVLEQMRQKAEIKGTKGPTVMMVGPTD
VGKSTLCKLLLNYAVRQGKRPMFVELDVGQGQISIPGTVGAILVERPSDIEEGFSQQGPL
VFHFGHISPGQNIELYNTLITRLAEVLQKRADVNKKVAQTGTIINTCGWVKQGGYKALLH
AAVAFEVDVVLVMDQERLYNELVRDLPKFISVVLTPKSGGVVERTKRNRLEAREAAVKQY
FYGLKTTLYPHSFDVKFSDIKVFKIGAPALPDSCMPLGMKVDDNRTKLVEVQNPASLLHH
ILSVSFAVSADEDTILSNVAGFVCVTNVDLERGTLTVLSPQPRPLPKSVLLVSDIQFVDS
VH
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcgacgttgagccgaaacaagattacaaactcgataaggaaaatgaattacgt
ttcgaggtggaaccgccacataaagttaagcttgaactggtcgaaggcagtgcggagatt
tttggagcggaaatagttaaagataagcagtacattttttctccaggctgcaaggtcgcc
gtgttcacatggtacggctgcactttgcgtatcatcggcataacggaagtggcttacgtg
tctaaagagacgccaatggtggtgtacgctaatattcatgcggttcttgaacaaatgcga
cagaaagcggagattaaagggaccaaaggtccaacagtaatgatggttgggccaactgat
gtaggcaagtcgactttgtgtaaactgttgctcaactatgccgttcgtcagggcaagaga
ccaatgtttgtagaattggacgttggccaagggcagatctcgattccaggcacggtaggt
gccattcttgtagagcgcccttcagatattgaggaagggttcagtcagcaggggccacta
gtgttccattttggccatatttcacccggacagaacattgaactctacaacacactgatt
acgcggctagcagaagtacttcaaaaacgcgccgatgttaataaaaaagtcgcacaaacc
ggaacaatcataaacacgtgtggatgggtaaagcaaggaggctacaaggccctgctacac
gcagccgtggcattcgaagtagatgtcgtccttgttatggatcaagagcggttgtacaat
gagctagttcgggatcttccaaaattcattagtgtagtgcttacgccaaagtcaggtggt
gttgttgagaggacaaaacgaaatcgcctggaagctagggaagctgctgttaaacagtac
ttctacggtttgaagacaacactctacccgcactcctttgacgtaaaattttctgacatt
aaagtattcaaaatcggggctcccgctctgccggattcgtgtatgccgcttggaatgaaa
gttgatgataataggacaaaacttgtcgaggttcagaatccggcaagccttctgcaccat
attctttcagtgtcttttgccgtatcggctgatgaggatacaatcctaagtaacgttgca
ggatttgtatgcgtaaccaacgtcgatctcgaacgaggcactcttactgtgctgagtcct
caacctcgaccgctacctaagtctgtgctgctcgttagcgatattcagtttgttgattct
gttcattaa
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