Vollenhovia emeryi: 105565834
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Entry
105565834 CDS
T06016
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
vem
Vollenhovia emeryi
Pathway
vem03020
RNA polymerase
vem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105565834
09124 Replication and repair
03420 Nucleotide excision repair
105565834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vem03021
]
105565834
03400 DNA repair and recombination proteins [BR:
vem03400
]
105565834
Enzymes [BR:
vem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105565834
Transcription machinery [BR:
vem03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105565834
DNA repair and recombination proteins [BR:
vem03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105565834
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
105565834
NCBI-ProteinID:
XP_011874747
LinkDB
All DBs
Position
Unknown
AA seq
1844 aa
AA seq
DB search
MTTSDSKASLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVNPHNPK
IKEIVMKTKGQPRKRLAFVYDLCKSKNICEGGDEMDINNMENQQQVERKPGHGGCGRYQP
NLRRSGLDVSAEWKHVNEDSQEKKIILSAERAWEILKHIKDEESFILGMDPKFARPDWMI
VTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVISENIKM
LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP
DPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPGAKYIVRDNGERIDL
RFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT
SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMT
KRDVFIEKEQMMNLLMFLPSWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNMIRTHSTH
PDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFY
GNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTP
GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG
QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTI
KVSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNRDRAVLREI
FPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKNLLEKCIIVAGDDRL
SKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGA
LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAAR
DAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISP
WLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKF
QDTDEDTVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEF
KAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQF
YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEV
DPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKSGIEIPMAVGAGMMGTAGMFFGSVTGM
SSMSPQMTPWMGATPGYGASSMSPALSSGMTPGGACFSPSGASDASGLSPAYSAYSPQPG
SPGSPGPSMSPFPMSPAGAASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSXXXXXXX
XYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTP
ASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPT
YSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSP
TSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgtccgactccaaggcatcgctgaggacggtgaagcgcgtccagttcggcatt
ctttcgccagacgagatacgtcgtatgtcggtcaccgatggcggcatacgatttccggaa
actatggaaggaggccgccctaagctgggcggcctcatggacccgaggcaaggtgttatc
gacaggaattccaggtgtcaaacttgcgccgggaatatgacggaatgccctggccacttc
ggtcacatagacctagcgaagccggtgttccacgtgggattcattacaaaaactatcaag
atattgagatgcgtgtgcttttactgctccaagttgctcgtcaaccctcataatccaaag
attaaagaaattgtcatgaagacaaaggggcagccgcggaagcgactcgcattcgtttac
gatctgtgcaagagcaagaatatctgtgaaggcggagatgaaatggatattaacaacatg
gagaaccagcagcaggtggagagaaagccaggtcacggcggttgcggtagatatcaaccg
aatctcaggcggtccggtctggatgtctccgcggagtggaaacacgtgaacgaagactcg
caagaaaagaagataattctctcggccgagagggcctgggagatcctgaagcacatcaag
gatgaggaatcgtttatcttgggcatggacccaaagtttgcacgaccggattggatgatc
gttacggtgctgccggtgccgccgttgtccgttagacccgcggtaattatgtacggctcc
gccaagaatcaggacgatctgacgcacaagctggcggacatcattaaatcgaacaacgag
ctgctgcgaaacgagcagtccggcgcggcggcgcacgtgatctcggagaatataaagatg
ttgcagttccatgtggcgacgctcgttgacaacgacatgcccggtatgccccgggcgatg
caaaagtcgggcaagcctctgaaggcgatcaaggctcggctgaagggaaaggagggtagg
attcgtgggaatctgatgggtaaacgcgtggacttttccgcgcgcactgtcatcacgccg
gatcccaacctgcgcatcgatcaagtaggcgtgccgcgtagtatagcgcaaaatctgacg
tttcccgagatcgtgacgcccttcaacatcgataagatgcaggtgctggtcaggcgcggc
aattcgcagtatcccggcgcgaaatacatcgttcgcgacaacggcgagaggatcgatctg
cgttttcatcccaagtcttcggacctgcacctgcaatgcggctaccgggtggagcggcat
atccgcgacggcgatctcgtaatcttcaatcgtcagcccactcttcacaaaatgagtatg
atgggccatcgcgttaaagtgctcccgtggagcacgttccgcatgaatctgagctgcacg
tcgccgtacaacgccgactttgacggcgacgagatgaatttgcacgtgccgcagtcgatg
gagacccgcgctgaggttgagaacattcacgtgacaccgcggcagattattaccccgcaa
gcgaataagccagttatgggaattgtacaggacaccctgaccgctgtaagaaagatgacc
aagcgcgacgtgttcattgagaaggagcagatgatgaatctactcatgtttctgcccagc
tgggacggcaagatgccacagccgtgtattctgaagccgaagccgctgtggaccggcaaa
cagctgttctctcttattataccgggcaacgtcaacatgatacggacgcacagcacgcat
cccgacgaggaggacgatggtccatacaagtggatctcgccgggtgacaccaaggtaatg
gtggagcatggagaacttgtaatgggtattctctgtaagaaaaccctgggtacctccgcc
ggttcgttgcttcacatctgtatgctcgagctgggccacgaggtatgcggacgcttctat
gggaacattcagaccgtcatcaacaattggctgttactggagggtcattccattggtatt
ggcgacactattgcggatccgcagacatatttggagatccagaaggcgatcaagaaggcg
aaagaggacgtgatagaggtgatccagaaagcacacaatatggaactcgagcctacaccc
ggcaacacgcttcgtcagacttttgagaatcaggtgaacaggatactgaacgacgccaga
gataagaccggaggctccgccaagaagtccttgactgaatacaataatttaaaagccatg
gtggtgtcgggctccaagggctccaacatcaacatctctcaggtcatcgcttgtgtgggc
cagcagaacgtcgagggtaagcgaataccctttggcttccgtaagagaacgctgcctcat
ttcatcaaggacgactacgggccagagtctcgcggttttgtcgagaactcgtatctagcc
ggtctcacgccgtcagagttctacttccacgcgatgggtggtcgtgagggtcttatcgat
accgccgtgaagacagccgagaccggttacattcagcgtcgtttgataaaggctatggag
tcggtcatggtgcattacgatggcaccgtgcgtaattccgtcggtcagctgattcagttg
cgttacggagaggacggtctctgcggcgagactgtcgagttccagaacttgccgacgatt
aaggtgagcaacaaggccttcgagaagaagttcaagttcgacccgaccaacgagcgttat
ctgcggcgtatattcaacgaggacatagtccgggaaatgatgggctccggagaggtgata
tccgagctggagagagaatgggaacaattgaacagagatcgcgctgtactccgggagatc
ttcccaagcggcgagtccaaggttgtactgccctgcaatctgcagaggatgatttggaac
gtgcaaaagatattccacatcaataagcgagcaccgaccgatctcagtcctatgagggta
atccaaggcgtgaagaatctcctggaaaagtgtattatcgttgccggggatgatagactg
agcaaacaagcgaacgagaatgcaacgttattgttccagtgtttagtaaggtcgacttta
tgtaccaaatgcgtctccgaggagttcaggctgtcaagcgaagctttcgagtggctgatt
ggagagatcgagacgagattccaacaggctcaagtatcacccggtgagatggtcggcgcg
ttggcggcgcagtctcttggtgagcctgctacccagatgaccctgaacactttccacttc
gccggtgtatcgtcaaagaacgtaaccctcggtgtacccagactgaaggaaatcattaac
atcagtaagaaaccgaaagcgccgtcgctcacggtgttcctgacgggcgcggccgcgcgc
gatgctgaaaaggcgaagaacgtgctctgccgactggagcacacaacgttgaagaaggtg
acggctaacacggcaatatactacgacccggacccgcagaacacggtaatcgcagaagac
caggagttcgtcaacgtttactacgagatgcctgactttgaccccacaaaaatatcgccg
tggctactgcgaatcgagttggacagaaaacggatgaccgacaagaagctgacgatggag
cagatcgcagagaagatcaacgccggcttcggtgacgacctgaactgtatattcaatgac
gacaatgctgagaagttggtgctgcgtattagaataatgaacagcgacgataacaagttc
caggacacggacgaggacactgtagataaaatggaggacgacatgttccttcggtgcatc
gaagccaacatgcttagcgacatgactctgcagggtatcgaagctattggcaaggtttac
atgcatctgccacaaacagattccaagaaacgcattgttatcacggaaaccggcgagttc
aaggccatcgcggagtggctcttagaaaccgacgggacgagcctgatgaaagtgttgagc
gagagagacgtggatcccgtacgaacgttcagcaatgatatctgcgagatattccaagtg
ctcggcattgaagccgtgcgaaagtctgtagagaaggaaatgaacgcagtattgcagttt
tacggcctttacgtcaactaccgacatctcgctttactttgcgacgtcatgacggcaaag
ggtcatctcatggctataacgcgtcatggaatcaatagacaagacaccggtgctttgatg
agatgttccttcgaagaaacggttgatgtattactagatgctgcatctcacgcagaggta
gatccaatgagaggggtatccgagaatattataatgggacaacttcctcggatcggaaca
ggatgcttcgatctgctactggatgctgagaagtgcaaatctggcatcgagatccctatg
gcagttggcgcaggtatgatgggaacggcgggaatgttcttcggtagtgtgactggcatg
tccagcatgagtcctcagatgactccttggatgggagctactcctggttatggtgcatca
agtatgtcgccggcattgagcagtggtatgacaccaggtggtgcgtgcttttcaccgtcg
ggggcatctgatgcatcgggcttatcaccagcatactcggcttactcaccgcaaccggga
agtccgggtagtccaggtccgagtatgagtccattcccaatgtcaccggctggtgcagca
tcgcctagttattctccgacgtcgccggcgtatctgcctacgtcgcccagcatgacaccc
tcaagtccaaactattcccctacaagtccgacgtattcnnnnnnnnnnnnnnnnnnnnnn
nnntattcgccaacatcgccaagctattcgccgacgagtccgagttattcgccaacttcg
ccgagttattccccgaccagcccaagttactcgcctacgagtccaagctattcacccacg
agtccaagttactcaccgacttcgccaagctattcaccaagctcgcctaactacacacct
gcttcaccctcgtattcaccgacctcgccgagttattcgccaagttcgccgcagtattcg
cctgcgagtccaagctattcccctagcagtcccaagtactcgccgacgagtccgagttat
tctcctacgtcaccgtcgttcgctggtacatcgccgcaatacacgcctgcaagtcccaca
tattcgccgaccagtccgacatactcgcctacaagcccgtcgtactcaccgagctcgccg
cagcacacagcatctggtagcacccggtattcacccagtagtccgaactattcgcctacc
agtccaacatattcgcccacaagtccacaatactcgccgtcgagcaccaaatattcgccc
acgagtcctacgtacacgcctacaagtccgagttattctccaacaagtccgacgtattcg
ccgcccgtaccaggatattcacccacgagtcccacgtactcgccagcgtcacccgcttac
gagacagatgactaa
DBGET
integrated database retrieval system
