Vibrio antiquarius: VEA_000170
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Entry
VEA_000170 CDS
T01107
Name
(GenBank) GGDEF family protein
KO
K20962
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vex
Vibrio antiquarius
Pathway
vex05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vex00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VEA_000170
Enzymes [BR:
vex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
VEA_000170
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAF_2
Ribosomal_L5e
DUF5547
GvpL_GvpF
Motif
Other DBs
NCBI-ProteinID:
ACY52858
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Position
2:184368..186278
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AA seq
636 aa
AA seq
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MGRLQTLDYEIPESMQKSWQEIVNLLAQITHVPTTLIMRIHPDRIEVNTSSETQGNPYRT
GDTELLGNGLYCEHVIEHKSELMVPNALEDEEWCNNPDIKLGMISYCGLPLFWPNGETFG
TICMLDSKKNEYSDTYRQLLGTFKDSIEAQLSVVYQQHKLQRLNNELKNRVENRTTDLAQ
LSYSLTKEIDRRKAAEKQVSYQKTHDQGTGFLNRAALESVVGETLGTLDHSQQSLLVINI
GFSNARSIQTRYGFEAFDEILKEFRYRLGKRESSYFVTGRPSSNDLVLLIWGNDIDMKLR
KLLDDITNIGLGSFYIKDTEVHLNSYIGVVQAHQTSNAKQLLQNACYAMLLCKESGEAYS
YFCESHSNELNNHNQLESYLLQAVRNDDLMLYFQPKVHPHTHKWIGAEALLRWRHPILGD
VSNEALIHMAEQNGLIFEVGSFVLRTAIDKAKQWSELIDNFKIAVNVSPIQLQNVNFAEQ
VQHLLESFHLPAHFLELEVTESALIADEIVARTTLNKLHELGVTLSLDDFGTGYASFSYL
KKYPFDAIKIDKSFVQQMEKSDDDRAIICSIIHIAKKLDLQVVIEGIESPQQEQFLIGEG
CDIGQGFLYGKPMPCNEFEQSLFNQRLSGGQYAYSS
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggggagattgcaaacattagattatgaaatccctgagtctatgcaaaaaagttggcag
gaaatcgtcaacttactggctcaaataacgcacgtacccaccacattaatcatgcgtatc
catccagatcgtattgaagtcaacacatccagtgaaactcaaggcaacccctatcgtacc
ggcgatactgaactgctcggcaacggtttatattgtgagcatgtcattgagcataagagc
gaactcatggttcctaatgcgctcgaggatgaagaatggtgcaataaccctgacataaaa
ctaggcatgatatcttattgcggtttaccgttattctggccaaacggagagacgtttgga
accatctgcatgcttgattccaagaagaatgaatacagcgacacttaccgccaattgctc
ggaactttcaaagactcaatcgaagcgcagctctctgtcgtgtatcagcaacacaaactc
cagcgccttaataatgaactcaaaaatcgagttgagaaccgtactacggacttagcgcag
ttgagttactccctaacaaaagagattgatcgtcgtaaggctgcagaaaaacaagtgagc
taccaaaaaacacacgatcagggaaccggattcttaaatcgcgcagcactggaaagtgtt
gtcggagaaacgctcggaacgttggatcatagtcagcaatcactgctcgtgataaacatt
ggctttagtaatgctcgcagtatccaaacccgttatggctttgaggcctttgacgagata
ttaaaagaatttcggtatcgccttggtaaacgagaatcgagttattttgttaccgggagg
ccgagctcgaatgaccttgtattactcatttggggcaacgatattgatatgaaattgcgt
aagctactggatgatatcaccaatattggcttgggaagcttttatataaaagacacagag
gttcacctcaactcttatattggtgttgtgcaagcccaccaaaccagcaatgccaaacaa
cttcttcaaaatgcatgctatgccatgctgctgtgtaaagagtctggcgaagcgtatagt
tatttttgtgaaagtcattcgaatgagctaaacaaccacaatcaattggaaagctactta
ttgcaagcggtaagaaatgacgacctgatgctgtactttcagcccaaagttcatccccat
actcacaaatggattggcgcagaagcattgctgcgctggagacacccaatactgggagac
gtctctaacgaagcattaatacatatggctgaacaaaacggacttatttttgaagttggc
tcttttgttcttcgtaccgcgatagacaaagctaaacagtggtcggagttaattgataat
ttcaaaattgccgttaacgtctctccaattcaattacaaaacgtgaactttgcggagcaa
gtgcaacacctactcgaatcctttcacttaccagcacattttctcgaactcgaggtgacc
gagagcgctttaattgccgatgaaatcgtagcacgcacaacgctaaacaaattgcacgaa
ctaggtgtgacgttgtcactagatgacttcggtacagggtacgcctctttcagctatttg
aagaaatacccatttgatgccatcaagattgataagagctttgtccagcaaatggaaaag
tcggacgatgatcgtgcgatcatttgctctatcatacacatagctaaaaaactggacctc
caagtggttattgagggcattgaatccccccaacaagagcagtttcttattggtgagggt
tgtgatattgggcaaggctttctctatggtaaaccgatgccttgtaatgaatttgagcaa
agtttgtttaatcagcgtctttcaggcggacaatacgcctactcttcctaa
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