Vibrio furnissii: vfu_B01380
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Entry
vfu_B01380 CDS
T01680
Name
(GenBank) GGDEF family protein
KO
K20962
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vfu
Vibrio furnissii
Pathway
vfu05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vfu00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
vfu_B01380
Enzymes [BR:
vfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
vfu_B01380
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAF
GAF_2
Motif
Other DBs
NCBI-ProteinID:
ADT89559
LinkDB
All DBs
Position
2:complement(1457171..1459087)
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AA seq
638 aa
AA seq
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MSKINTQSLTVPQEMLSGWQTIVNLLADILQVPAALIMRLHDEEIEVFCANTNVKQPYRS
GDTEALGQGLYCETVAKTRQELLIPNALTDMKWRHNPDISHGMVAYCGIPVCWPNGDLFG
TICVLDNKANAFTPTYRKLLQSFRVSLESQLTVIYQHQKLKLLNDDLQARIQIRTQDLAD
LNYSLNQEIDKRKAAEQLVAFQLHHDTSTAFFNHSGLEREVDKALTRGDHDLALLYVGFA
NARHLQSRLGYQNWEKVLKRYRERVGHFEGIEILTARPTANDLVLLVKAPSLENSLELLC
HRLVGIHQAEFQLEQERFHLNAYIGIATHADSVHAGELIHFASEAMLACKDSGYQFHYHS
QSSADQLASANALESYLLQALQNDDLALYFQPKVDPRSRRWLGAQTVLRWSHPLLGDVTH
EALINMAEQNGLMFEVGNFVLRHTIEMAGRWRHSFPSLRLTAAISTGQLQNGQLAQQIEA
LLNAHDVPPAQLDLEINENALLSDEVVARNTLSALHQLGVHLTLSEFGSGFASFHHLKHY
PFDAIKLDKTFVQQLTHNDEDEEILRSVIHVAQKLHLQVGVEGVDTPEQDTFFIEEGCDI
AEGYLYGRPLPTEEFELVMLNQSYSFAKLGGNTHLASK
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaatcaatacacagtcattaactgttcctcaagagatgctgagtggctggcaa
accatcgtcaatctgttggccgatatcctccaggttcccgccgcactcatcatgcgtctg
cacgatgaagaaatcgaagttttctgcgccaacaccaatgtcaaacagccgtatcgcagc
ggcgataccgaagccctcggccaaggcctgtattgcgaaacagtggccaaaacacgtcaa
gaactgctcatcccaaatgccttaaccgacatgaaatggcgtcataaccccgatatttct
cacggcatggtggcctattgcgggattccggtctgttggcccaatggcgacctgtttggc
accatctgtgtgctggacaataaagcgaatgccttcacgcccacgtatcgcaagctgctg
caaagttttcgtgtttcgctcgaatcgcaactcactgtgatttaccaacatcagaagctc
aaactgctcaatgatgatctgcaagcgcgcattcaaattcgcacccaagatttagccgac
ctcaactactccctcaatcaggaaattgacaagcgtaaagcggcggaacagttagtcgcg
ttccaattgcaccacgacaccagcaccgctttcttcaatcattccggtttggagcgtgaa
gtcgacaaagcactcacgcgtggcgatcacgatttggcactgctgtatgttggctttgcc
aacgcccgtcatctgcaatcacgcttggggtatcaaaattgggagaaagtgctgaagcgc
taccgcgaacgcgttgggcattttgaaggcattgaaatcctcacggcgcgccccaccgcc
aacgatttggtgctgttggtcaaagcgccatccttagagaacagtttggagctactgtgc
catcgactggtcggcattcatcaagccgagtttcaacttgagcaagaacgctttcacctc
aacgcctacattggcattgcgacccatgccgactccgttcatgccggagaactgatccac
tttgcgtccgaagccatgttggcctgcaaagattccggctatcaattccactaccattct
caatccagcgcggatcaattggcgtccgccaatgcactggaaagttacctgttgcaggcg
ttgcaaaatgatgacttagcgctctattttcaacccaaagtggatccccgttcacgccgt
tggttaggcgcgcaaaccgtcctgcgttggagccatccactgctgggtgacgtcacacat
gaagcgctcatcaacatggccgaacaaaacgggctgatgtttgaagtaggtaactttgtg
ctgcgccacaccattgaaatggccggccgctggcgtcactccttcccctcgctacgactc
accgctgcaatttcaacgggtcagctacaaaatggtcagttggcccaacagatcgaagcc
ttgcttaacgcgcatgatgtaccgcccgcgcaacttgatttggagatcaacgaaaatgcc
ttgttgtccgatgaagtcgtcgcgcgcaacacactcagtgccttacatcaactgggggtt
cacctcacactgagcgagtttggatcgggatttgcttcattccatcacttaaaacattac
ccatttgatgcgatcaaactcgacaaaacctttgtgcagcaactcacccataacgacgaa
gacgaagagattctgcgttcagtcattcacgttgcgcagaaactgcatttgcaagttggg
gttgaaggcgtcgataccccagagcaagacacgtttttcattgaagaaggatgcgatatt
gctgaggggtatctgtacggacgtccattgccaaccgaagagtttgaactggtgatgctc
aatcaaagttattcctttgccaaattgggcggcaacacccatttagcatcaaagtag
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