Viruses: 11945643
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Entry
11945643 CDS
T40000
Symbol
S, MRCoV-HKU18_gp2
Name
(RefSeq) Magpie-robin coronavirus HKU18; spike glycoprotein
KO
K19254
Coronaviridae (excluding betacoronavirus) spike glycoprotein
Virus
1159903
Magpie-robin coronavirus HKU18
Taxonomy
SSDB
Ortholog
Paralog
GFIT
Vog
Vog cluster
Motif
Pfam:
CoV_S2
CoV_S1
CoV_S1_C
CoV_S2_C
DUF1664
BLOC1_2
EXOC6_Sec15_N
Baculo_F
Syntaxin-6_N
HMMR_N
V_ATPase_I
TMF_DNA_bd
Phage_GPO
XhlA
Pox_EPC_I2-L1
DUF2959
GP41
Motif
Other DBs
NCBI-GeneID:
11945643
NCBI-ProteinID:
YP_005352854
RS:
NC_016993
UniProt:
H9BR08
LinkDB
All DBs
Position
NC_016993:19338..22991
Genome browser
AA seq
1217 aa
AA seq
DB search
MRGAILTLILVTSVKASPLADSVLDFLTFPGAHSYLHPRRGDLGALGNRMRANIRNSQTD
VCTTIQQGGFIPSTFTFPQWYVLTNGSTFLQGEYTLSQPLLANAHFCPRKNSDGYWRYSF
NNSCLFPDHRCQDHWYDSQNPICLGWNNTFGLSDNIRININISHDEYQSHGGYVSLTLES
GSVVNITCTNNSDPSTVTLATSLLPWARAIDQPMYCFANLTTGTASQLDFMGMLPPLVSE
LAFDRTGGIYINGYRYYLTSALRDVDFKLKRNDTAEYFAVTWANYTDVHLSVDAGAIEKI
KYCNTPLDRLACDMNVFNLSDGVYSYTSLEKASVPETFVTLPVYSNHTYVTINTSYTVGS
CVNCPPISSTIDIMHARNDTLCVNSRQFTVRLNTHHHAQYPQYFSTAFVAGTCPFTLPNI
NNYLTFGSVCFSTVNNGGCTIHVQKVWNHQYHTFGTIYVAYQDGNYITALPQPSTGVADI
STVHLDVCTKYSIYGKTGTGVIRETNQSYTAGLYYTSSSGDLLAFKNVTTQKVYSVTPCT
LASQVAVYNNSILAAFTSTANLTAIDFNYTIATPTFYYHSIGNETCEQPVITYGSIGLCP
GGGLRLAHPTEDAAPILVPISTSNISIPKNFTVSIQTEYIQIEQQPVVVDCRQYVCNGNP
RCLQLLQQYTSACSTIEQALSLNARLEASSIQDLLTYSPETLVLANISNFDSGDLNYNLS
SLLPKELYGKSAIEDLLFNKVVTNGLGTVDQDYKACTNGMSIADLVCAQYYNGIMVLPGV
AGPEKMAQYTASLTGAMVFGGITAASAIPFSLAVQSRLNYVALQTDVLQQNQQLLADSFN
NAIGNITLAFKEVSEGLSQVSGAVATVANALTKVQTVVNEQGHALATLTQQLANNFQAIS
ASISDIYNRLNQLEADAQVDRLITGRLASLNAFVTQTLSKLAEVRQQRQLATDKVNECVK
SQSPRYGFCGNGTHLFSIVNAAPQGLLFFHTVLLPTQYAYVQAFSGICYNGIALALNDPT
LALFKNGDKYLVSPRNMYQPRVPAQADFVYIETCTITYLNLTDLTIDVVIPDYVDVNQTV
NDILSKLPNSTGPSLTIDQYNNTILNLTTEIADLNNRTQNLSDVVQNLEEYIHKLNATLV
DLDWLNRVETYIKWPWWVWLLITLAIVAFVVILVTIFLCTGCCGGCFGCCGGCFGLFSHN
KRNTESIPITSFKLKEW
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgcggggagctatattaactttaatcctcgtcacatcagtcaaagcgtctccgcttgcg
gattccgttcttgacttcttaaccttccctggcgcccacagttatctacacccaaggagg
ggagatctaggagcgctaggcaaccgcatgcgtgccaacatacgtaactctcagactgat
gtttgcaccacaattcagcagggcggtttcataccctccactttcacttttcctcagtgg
tatgtcctaaccaatgggtcgactttcctacagggtgagtacaccctctctcagccattg
ctcgccaatgctcacttctgtcccaggaagaactctgatgggtattggcgctattcattc
aacaattcatgcctctttcctgaccaccgctgtcaggaccactggtatgactcccaaaac
cctatctgtctaggctggaataacacttttggcctttccgacaatatccgcatcaacatt
aacatatcccacgatgagtaccaatcacatggaggttatgttagcttaacacttgagtcg
ggttctgttgttaatatcacttgcactaacaactccgacccatcaacggttactctagcc
acatcgctactgccctgggctagggccatagatcagccgatgtattgctttgccaacctc
accacaggcactgcatctcagctggattttatgggtatgttaccacctctcgtgtcagaa
cttgcttttgaccggacgggtggtatctacattaatggctaccgctattatttaactagc
gccctccgtgatgtggatttcaagttaaagcgcaacgacaccgcggagtacttcgccgtt
acttgggctaattatactgacgtccatcttagcgtagatgctggcgccattgagaaaatt
aagtattgcaacaccccactagacaggttggcgtgtgacatgaatgtctttaatctaagt
gatggggtctactcctacacctcacttgaaaaagccagcgttccagagacctttgtaacg
ctgcccgtctattcaaaccatacgtatgtgacaattaacacctcctacaccgttggtagc
tgtgttaattgtccacccatatcctccaccattgacatcatgcacgcacgtaatgatacc
ttatgtgttaattctagacaattcaccgtccgtcttaacacccatcaccatgcgcagtac
cctcagtactttagtactgcatttgtagcgggcacttgtccttttacgctacccaatatt
aataattatttaacatttggtagcgtttgtttttccaccgttaacaatggtggttgcacc
atccatgtccagaaggtttggaaccaccaataccacacctttggcaccatctatgttgcc
taccaagatggcaactacatcacagctctgccgcagccctccactggtgttgctgacatc
tccactgtccatcttgatgtctgtaccaaatactccatttatggtaagacgggtacgggc
gtcatacgcgagacgaatcagtcctacactgccgggctctattacacttcttcttctgga
gatttgttagcgttcaaaaacgtaaccacccagaaggtctactctgtaaccccctgcacc
cttgctagtcaggttgcggtttacaacaactctatcctggcagcattcacctccacggcg
aacctcactgccatagatttcaattacacaatcgctactcccaccttttactaccattcc
attggtaatgagacgtgcgagcagcctgttatcacttatggttccataggtctctgtccc
gggggtggccttcgccttgcccaccccacggaggatgcagcccctattttggttccgatt
tccacaagtaacatttccatacccaagaactttactgtatctattcaaactgaatacata
cagatcgagcaacagcctgttgtagttgactgccggcagtatgtttgcaatggcaaccct
cgctgcttacagttacttcagcaatacacctctgcatgctccaccatagagcaggctctt
tcactaaatgctcgtctagaggcatctagcattcaagacttgctcacatattcacctgag
acactggttctagccaacatttcaaactttgactcgggtgatcttaattacaacctttcc
tccctcctacccaaggagctgtatggcaagtctgccattgaggatctactttttaataaa
gtagtcactaatggcctaggcactgttgatcaggattataaggcatgcactaatggcatg
tctatagctgaccttgtctgcgcccaatactataacggcattatggttcttccaggcgtt
gccggtccagaaaagatggctcaatacacggcatcgcttactggtgctatggtattcggc
ggtatcacagccgcatcagctatacccttctcactagctgttcaatctcgacttaattat
gttgcactacagactgatgtgctgcaacaaaaccagcaattgttagccgactcatttaat
aatgcaatcggcaatattacattagccttcaaagaagttagtgagggcctctcacaagtc
tcgggcgcggtagcaaccgtcgccaatgcgctcaccaaggttcagactgttgttaatgaa
caaggccatgcccttgcaacactaacgcagcaactggccaataactttcaggctatctcc
gcctctatatccgacatctataacagactcaaccaacttgaggcagatgctcaggttgat
agacttattacgggacgtctagcatcactaaatgcattcgtcacacagacactatcaaaa
ctagctgaagtccgccagcagcggcagctagccactgataaagttaatgagtgcgttaaa
tcacagtccccccgctatggattctgtggtaacggcacccatctcttctcaattgtcaat
gcagcgccacaagggttgttattcttccacactgtgttgttaccaacccaatatgcttat
gtgcaggccttctcgggcatttgctacaatgggatagcgcttgcccttaacgaccccaca
ctagcactatttaagaatggagacaagtacctcgtgtccccgcgtaatatgtatcagcct
cgagttcccgctcaagccgacttcgtatacattgagacttgtaccatcacctatctcaat
ctcactgatcttactattgatgttgttatccctgattacgtagatgttaatcagactgtt
aatgacattcttagtaaactacccaatagtactggaccaagtttaacaattgaccagtat
aacaatactatcctcaacctcaccactgagattgcggacctcaacaatcgcactcaaaat
ctatctgacgttgttcagaatcttgaagagtacattcataaattaaatgccacactagtt
gacctcgattggctcaacagagtggaaacttatattaagtggccgtggtgggtctggtta
ctaatcaccctcgccatcgtcgcatttgttgtaattttagtcaccatcttcctctgcact
ggctgctgcggaggttgctttggttgctgtggtggctgttttgggctcttctctcacaac
aagagaaacaccgagtccataccgatcacctcttttaaacttaaggaatggtag
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