Viruses: 1490018
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Entry
1490018 CDS
T40000
Symbol
gag, Opavgp1
Name
(RefSeq) Jaagsiekte sheep retrovirus; gag protein
Virus
11746
Jaagsiekte sheep retrovirus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
Vog
Vog cluster
Motif
Pfam:
Gag_p24
Gag_p10
Gag_p24_C
zf-CCHC_5
zf-CCHC
ParD
HTH_Tnp_Mu_2
TackOD1
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
1490018
NCBI-ProteinID:
NP_041184
RS:
NC_001494
UniProt:
P31622
Structure
PDB
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All DBs
Position
NC_001494:263..2101
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AA seq
612 aa
AA seq
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MGHTHSRQLFVHMLSVMLKHRGITVSKTKLINFLSFIEEVCPWFPREGTVNLETWKKVGE
QIRTHYTLHGPEKVPVETLSFWTLIRDCLDFDNDELKRLGNLLKQEEDPLHTPDSVPSYD
PPPPPPPSLKMHPSDNDDSLSSTDEAELDEEAAKYHQEDWGFLAQEKGALTSKDELVECF
KNLTIALQNAGIQLPSNNNTFPSAPPFPPAYTPTVMAGLDPPPGFPPPSKHMSPLQKALR
QAQRLGEVVSDFSLAFPVFENNNQRYYESLPFKQLKELKIACSQYGPTAPFTIAMIESLG
TQALPPNDWKQTARACLSGGDYLLWKSEFFEQCARIADVNRQQGIQTSYEMLIGEGPYQA
TDTQLNFLPGAYAQISNAARQAWKKLPSSSTKTEDLSKVRQGPDEPYQDFVARLLDTIGK
IMSDEKAGMVLAKQLAFENANSACQAALRPYRKKGDLSDFIRICADIGPSYMQGIAMAAA
LQGKSIKEVLFQQQARNKKGLQKSGNSGCFVCGQPGHRAAVCPQKHQTSVNTPNLCPRCK
KGKHWARDCRSKTDVQGNPLPPVSGNWVRGQPLAPKQCYGATLQVPKEPLQTSVEPQEAA
RDWTSVPPPIQY
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgggacacacgcatagtcgtcagttgtttgtgcatatgttatctgtaatgttaaaacat
agggggatcactgtttctaaaactaaattaattaattttctttcatttattgaggaagtt
tgcccttggtttcctagggaaggcacagtgaatttggagacatggaagaaggtgggagag
caaattcggacgcattataccttacacggccctgaaaaggtccctgtcgagacattatct
ttttggacattgattcgtgactgcctggattttgataatgatgaattgaaacgtttagga
aatttgttaaaacaggaagaagatcctctccatacccctgattcggtacctagttatgat
cctcctcctcctcctccgccatctctgaaaatgcacccttctgataatgatgattcactt
tcatctacagatgaggcagaattagacgaggaagctgctaagtatcatcaagaagattgg
ggttttttagcacaagaaaaaggggcattaacatctaaagatgaattggttgagtgcttt
aaaaatcttactattgccttacagaatgcagggattcagcttcctagtaataacaatacc
tttccctctgctccgccttttcctcctgcttatactcccactgttatggctggccttgat
ccccctcccgggtttcctccgccgtctaaacatatgtctccattgcaaaaggcattaaga
caggcacaacgactcggtgaagttgtttctgatttctctcttgcctttcctgtcttcgaa
aataacaaccagcgttactatgaatcactgccgtttaaacaactaaaagagttaaagatt
gcttgttcgcaatatggtcctaccgctccatttactattgctatgatagaaagtttgggt
actcaagctttgcccccgaatgactggaaacagaccgctagggcatgtctctcaggggga
gattatttattatggaaatctgaattttttgaacaatgtgctcgtatagctgatgttaac
cgacagcaaggtatacagacctcctatgaaatgttgattggcgaaggcccttatcaggct
actgatacgcagcttaatttcttacctggtgcatatgcacaaatatcgaatgcggctcga
caggcatggaaaaaacttcctagctccagtactaagacagaggacctttcaaaggtccgg
cagggacctgatgagccttaccaggacttcgtggcacgacttttagatactataggtaag
ataatgtcagatgaaaaggctgggatggtgctggcaaaacaattagcttttgaaaacgct
aactctgcttgtcaagctgctttgagaccttatcgaaaaaagggagatctatctgatttt
attcgcatttgtgctgatattggaccctcctacatgcaaggcattgctatggcagcagca
ttacaaggaaaaagcataaaagaagtacttttccagcagcaagcccggaacaagaaagga
cttcaaaagtcaggtaattcgggttgctttgtttgtggtcagcctggccatcgggctgca
gtatgccctcaaaaacatcaaacctctgttaatacccctaatttgtgcccacgctgtaaa
aaaggaaagcattgggcacgagactgccgttccaagacagatgttcaaggcaatcctttg
cccccggtttcgggaaactgggtgaggggccagcccctggccccgaaacaatgttatggg
gcaacactgcaggttccaaaagaaccattgcagacctctgtcgagccacaagaggcagcg
cgggattggacctctgtgccacctcctatacagtattaa
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