Viruses: 5758809
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Entry
5758809 CDS
T40000
Symbol
HRVC_gp1
Name
(RefSeq) Rhinovirus C; genome polyprotein
KO
K25281
Enterovirus genome polyprotein
Virus
463676
Rhinovirus C
Taxonomy
SSDB
Ortholog
Paralog
GFIT
Vog
Vog cluster
Motif
Pfam:
Rhv
RdRP_1
Pico_P2A
Peptidase_C3
Pico_P2B
RNA_helicase
Pico_P1A
P3A
RdRP_4
Calici_coat
Zeta_toxin
AAA_16
RdRP_3
Rad17
nSTAND3
Motif
Other DBs
NCBI-GeneID:
5758809
NCBI-ProteinID:
YP_001552411
RS:
NC_009996
UniProt:
A8S322
LinkDB
All DBs
Position
NC_009996:616..7050
Genome browser
AA seq
2144 aa
AA seq
DB search
MGAQVSKQNVGSHENSVSATGGSVIKYFNINYYKDSASSGLTKQDFSQDPSKFTQPLAEA
LTNPALMSPTVEACGMSDRLKQITIGNSTITTQDTLNSILAYGEWPKYLSDLDASSVDKP
THPETSSDRFYTLTSVDWTTTSKGWWWKLPDCLKDMGIFGQNLYHHALGRSGYIIHTQCN
ATKFNSGCLIVAVVPEHQLAYIGEANVNVGYDHTHPGEGGHVIGSNVRRDNKQPDEDPFF
NCNGTLLGNITIFPHQLINLRTNNSSTIVVPYINCVPMDNMLRHNNLSLVIIPIVPLRAA
NGVTKVPITISIAPDKSEFSGARQSVKQGLPTRLPSGSQQFLTTEDEQSANLLPDFSVTK
IIDIPGRITNILHMAMVDSFMPLNNIETNVGQISIYNVQVTKKTADKPIVVIPMDISNTL
FSTTLLGEVLNYFANWSGSISITFMCVCDSFSTGKFLLAYTPPGAALPPDRKTAMLGVHV
IWDLGLQSSCTIVVPWMSGTFHRRTKADNYTQAGYVSLWYQTDFVSPNDGIGTIVATCSG
CPDLSVRMLRDTPMMKQEKDLTQNPVEDYIDKVVDTVLQVPNTQPSGPQHSIQPSALGAM
EIGASSTTIPGDLIETRYVINSNTNSEALIENFMGRSALWAKIQVANGFAKWDINFQEHA
QVRKKFEMFTYARFDMEVTVVTNNTGLVQIMFVPPGIDAPDSIDSRLWDSASNPSVFYQP
KSGFPRFTIPFTGLGSAYYMFYDGYDVPRNKSNAVYGITSTNDMGTLCFRAMEDTNEHSI
RVFVKPKHTIAWIPRPPRATQYTHKFSTNYHVKKPDDTTGLLIQKHFINHRTDIKTAGPS
DLFVHTATMIYRNAHLTSLNDKTVLLALSADLQVDAADQPGPDTIPQCDCLEGCYYSKSL
DRYIPVKLEAHDWYQIEETCYYPQHIQYNIMIGEGHCQPGDCGGKLLCTHGVIGIITAGG
DNHVAFTDLRPYSCLDTHQGPIQDYVTQLGSAFGSGFTDTLKDQLTDVSAHIKDKITSKV
VKWLVRIISALTIMIRNSTDTPTVLATLALLGCHKSPWSFLKDRLCQWLNITRPPSRQGD
GWLKKFTECCNAAKGLEWIGIKISKFIEWLKNRLLPTLQHKKEILDECKKIDLYQEQVKG
FSKVDEPAQQELLIKVEKLKKGLDSLAPLYAVENKRVTNIYKELKALSAYKTTQRTEPVC
ILIRGAPGCGKSLVTSIIARGLTKPGDIYSLPPDPKHFDGYDQQEVVIMDDLGQNPDGKD
LSMFCQMVSTTNFIPPMAALEDKGKTFTSKYILASTNLLNLQPPTVTVPEAIDRRFYLDL
DLKILQGYQNQVGLLDTAKALQPCANCSKPPHYKQCCPLLCGKAVVLVNRRTKGSYAINM
VVQQLIEESKSRKSVGNNLTAIFQGLGDKETPGFIIDLLSSSKDPKVIQYCQDQGYISPV
HGSIERDFAYVTYALNCLGSLVIILGTIYALYRLMCIAQGPYTGMPTTPKKKPELRRATL
QGPEHEFLNALIRRNCHIITTDKGEFNLLGIYSNCAVVPTHAEPGDVVDIDGRLVRVLKQ
QVLTDMNDVDTEVTVLWLDQNEKFRDIRRFIPEHQQDWHNIHLATNVTKFPMLNVEVGHT
VPYGEINLSGNATCRLYKYDYPTQPGQCGAVLANTGNIIGIHVGGNGRVGYAAALLRKYF
AEEQGAIISKCNVKEKNWKPVNTPSQTKLHPSVFHDVFPGVKEPAALHPKDPRLEVDLTT
AVMSKYKGNIDVPMNEYIETAVDHYAAQLYMLDINPEPITMEQAIYGYANLEPLDLTTSP
GFPYVSLGVKKKDILNNATKDTRKMQQMLDLYGIDLPYITFLKDELRAPEKIKAGKTRIV
EAASVNDTVYFRTTFGNLYSTFHANPGILTGSAVGCNPDVFWSQMHAMLDGELIAFDYTN
YDGSLEPVWFKALGKVLDQLGFPGHLTQRLCNTTHIFRDTTYDVKGGMPSGISGTSIFNT
MMNNIIIRTLVLETYKNINLDKLRIIAYGDDVVASYPDELDPKEIAMTAKRYGLTITPPD
KTDQFSKMTWDNVTFLKRKFKPDSKYKFLIHPVYSMQDVYESIRWTKDPKNTQDHVHSLC
LLAWHNGEEVYEDFCAKIRTTSVGKSLYLPPYKYLYRQWIDLFI
NT seq
6435 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcacaggtcagcaagcaaaatgtcggctcgcatgaaaactcagtctcagccaca
ggtggatccgtgattaagtatttcaacatcaattactacaaggattctgctagctctggc
ttgactaaacaagatttttcccaagacccatcgaaattcacacaacctctagcagaagca
cttacaaatccagctttaatgtcaccaactgttgaagcatgtgggatgtccgataggctt
aaacaaattactatcgggaattccactataacaacacaagatacactaaactctatactg
gcatatggggagtggcccaaatacttgagtgacctggacgcttcctcagtggataaacct
acccacccagaaacatcatctgatagattttacacattaactagtgtagattggaccact
acgtctaaaggttggtggtggaagttgcctgattgccttaaagatatgggcatcttcggg
caaaatctgtaccatcatgcattgggtaggtcagggtacataatacacacccaatgtaat
gccacaaaattcaatagtggttgtctaatagtggctgttgtaccagaacaccagctagct
tacataggtgaagcaaatgtcaatgttggttatgatcacacacaccctggtgagggagga
catgtaattggttcaaatgttaggagagataacaagcaacctgatgaagaccccttcttt
aattgtaatgggaccctgcttggtaacatcactatattcccacaccagctcataaacttg
aggacaaacaattccagcacaattgttgtaccatacattaattgtgtacctatggacaac
atgctcaggcacaacaacctatctctagttattattccaatcgttcctctcagagccgca
aatggtgtcaccaaggtccccattacaatctcaatagcaccagataagtcagagttctca
ggggctagacagtctgtaaaacaggggttaccaacacggctgccaagtggatctcaacaa
tttctcacaactgaggacgagcagtcggctaatcttctaccagactttagtgtcacaaag
atcatcgacattcctggtaggatcacaaacatactccacatggctatggtagattcattc
atgccactaaacaacattgagaccaatgtaggacaaatctcaatttacaatgtacaagtg
accaagaaaacagcagacaagcccatagttgtgatacccatggacattagcaacactctc
ttttctaccactttactaggtgaagttcttaattactttgcaaattggtcaggtagtatc
tctataacttttatgtgtgtttgtgatagctttagtacaggtaaatttttgctagcatac
acacccccaggagccgctttgccaccagacaggaaaaccgcaatgttaggtgtacatgta
atctgggatttgggactccaatcctcgtgcaccattgtagtaccatggatgagcggcacc
ttccatagacggactaaagctgacaattacacccaggctggatatgtgtcactatggtac
cagactgattttgtgtcaccaaatgatgggattgggacaatcgttgctacatgctccgga
tgtcctgatttgtctgttagaatgctgcgtgacacaccaatgatgaaacaggaaaaagat
ttgactcaaaacccagttgaggactacatagacaaggtggtcgacactgtactacaggtc
ccaaacacccaacccagtggtccacaacacagtattcaaccaagtgctttgggcgctatg
gaaattggggcatcttcaaccaccataccaggtgatctcatagagactaggtatgtaatc
aactcaaatactaacagtgaagccctaattgagaacttcatgggccgctcagctctttgg
gccaagatccaggtggcgaatggttttgcaaaatgggatataaacttccaagagcatgca
caagtcagaaagaaatttgaaatgtttacatatgctagatttgacatggaagttactgtt
gtcaccaacaacacaggtttggtacaaatcatgtttgtaccacctggtatagatgcacca
gatagtattgactcccgtctatgggattctgcctccaacccgagtgttttctatcaacca
aaatcaggttttcctaggtttactattccattcactggattgggttcagcttattatatg
ttttatgatggttatgatgtccccagaaataaaagtaatgctgtgtatggtatcacatct
acaaatgatatggggacactttgcttcagagctatggaagacaccaatgaacacagcatt
agagtctttgtaaagcctaaacataccatagcatggattccacgaccacctcgtgccacc
caatacacccacaaattcagcacaaactaccatgttaagaaaccagatgacactactgga
ctactaatacagaaacactttattaaccacaggactgatataaaaactgcaggcccaagt
gatctctttgtccatacagccactatgatttacaggaatgcgcacttaaccagcttgaat
gacaaaaccgttctactggctctcagtgcagatctccaggtggacgcagctgaccagcca
ggcccagataccatcccacaatgtgactgcttggagggctgctactatagcaaaagttta
gatagatatataccagttaaattagaagcacacgactggtatcagatagaggaaacctgt
tattacccacagcacatccagtataatataatgattggtgaaggacattgtcagcctgga
gactgcggagggaagttactgtgcactcatggtgtgattggcatcatcacagctggtgga
gacaatcatgtagctttcacagatctaagaccctattcatgtttagacactcaccaaggt
cctattcaggactatgtgacacaattagggagtgcctttggtagcggtttcactgacaca
cttaaagaccaattgacagatgtgagtgcccatattaaagacaaaattacttcaaaggta
gttaaatggctagtacgtatcatcagtgcacttaccataatgatacgtaacagtactgac
acacccactgtacttgcaacccttgctcttttaggctgtcacaagtcaccatggtcattt
ctcaaggaccggttatgtcagtggttaaacatcactagaccgccaagccgacaaggtgat
ggctggttgaagaaattcactgaatgctgcaacgccgctaagggccttgagtggattggc
attaagatcagtaaatttatagaatggcttaaaaatagactgcttcctaccttacaacac
aaaaaagaaatcttagatgaatgcaagaaaatagatctttatcaagaacaggttaaagga
ttttccaaagttgatgaaccagctcagcaggaactactaattaaagttgaaaaactgaag
aaaggtttagacagcctagcacctctgtatgcagttgaaaacaaaagagttacaaacatc
tataaagaactcaaagcattgtctgcatataaaacaacacagagaactgaaccagtatgc
atactgatcagaggagctcctgggtgtgggaaatctttggttacttcaataatagccaga
ggtttaaccaaaccaggtgacatttactcccttcctccagaccctaaacattttgatggg
tatgatcaacaagaagtggtaattatggatgatctgggccaaaaccctgatggtaaggac
ctttctatgttctgtcagatggtgtcaaccactaatttcattcccccaatggcagctctg
gaagataaggggaagacctttacaagtaaatatatattagccagcacaaatcttttaaat
ctccaaccacccacagtaacagtccccgaagccattgacaggcgcttctacttagattta
gatcttaagatcttgcaagggtaccaaaatcaagtaggcttgctagatactgccaaagca
cttcagccctgtgcgaactgtagtaagccaccacattacaaacaatgttgtcctttgcta
tgtggtaaagctgtagtactggtgaacaggagaactaagggcagttatgctatcaacatg
gtggttcagcaacttatagaggagagcaaatccagaaagagtgttggcaataatttaaca
gctatatttcagggcttgggtgataaggaaaccccaggtttcataatagatcttctatca
tcatctaaagaccctaaagtcattcaatactgccaagaccagggctacatctcaccagtc
catggctcaattgagcgagattttgcttatgtcacatatgctctaaattgtctaggtagt
cttgtgattattctgggtaccatatacgcattatatcgcttgatgtgtattgcccaagga
ccatacacaggcatgcctactacacccaagaagaaacctgagttaagaagagcaaccttg
caaggtcctgaacatgaatttttgaatgcccttattagaagaaactgccatatcattacc
actgacaaaggagaatttaacctactaggtatatactctaactgtgctgtagtaccaaca
catgctgaacctggtgacgtggtagatattgatggaaggttagttagagtgcttaaacaa
caagtcctcactgatatgaatgatgtggatacggaagtaactgtgttgtggcttgaccag
aatgaaaagttcagagacataagaagatttatacctgaacatcagcaagattggcacaat
atacatttagctaccaatgtcaccaaattccctatgctcaatgtagaagtaggacacact
gtaccctatggggaaatcaatcttagtggtaatgctacatgcaggttgtacaaatatgac
tatccaacccaaccaggtcaatgtggtgcagtgctggccaacacaggtaatatcatagga
atacatgtgggtggaaatggtagggttggttacgcagcagcactacttaggaaatatttt
gctgaggaacaaggtgccatcatttctaaatgtaatgttaaggaaaagaactggaaaccc
gtcaatacaccctcccagaccaaactacaccctagtgtcttccacgatgtgtttcctggt
gttaaggaaccagcagctttacaccccaaggatccacgattggaagtagacctcactaca
gctgttatgtcaaaatataaaggtaatattgatgtccctatgaatgagtacatagaaaca
gccgttgaccactacgcggcacaactttacatgcttgacatcaacccagaaccaatcacc
atggaacaagcaatatatggttatgctaacttggaaccattggaccttaccactagccct
ggtttcccttatgtgtctttgggcgtgaaaaagaaagacatcttaaacaacgctactaaa
gacacaaggaaaatgcaacagatgttagatctgtatggtattgatctaccctacataact
ttcctaaaggatgaactccgcgccccagagaaaattaaggctggtaagaccaggattgtg
gaggctgctagtgtcaatgatacagtgtactttagaacaacttttggcaatctatacagt
acttttcatgcaaacccaggtatcttaacaggctcagctgtggggtgtaatccagatgtg
ttttggtcacaaatgcatgctatgttagatggagaactcattgcttttgattacaccaat
tatgatggcagcttggaaccagtgtggtttaaagcgcttgggaaagtgttagatcagctt
ggcttccctggacaccttacacaaagattgtgtaatacaacccacatcttcagagacaca
acctacgatgtcaaaggtggcatgccgtcaggaatttcaggtacctccatatttaacact
atgatgaacaatatcataataagaactctggtcttggagacttacaaaaacatcaatttg
gacaaactacgcattattgcctacggtgatgatgtagtagcctcatatccagatgaattg
gacccaaaggagattgccatgacggccaagcgttatggtctcactatcactcccccagat
aaaacagatcaattttccaagatgacctgggataatgtgaccttccttaaacgtaaattt
aaacctgactccaaatacaaatttctgatacatcctgtttactcaatgcaggatgtttat
gagtcaatcagatggactaaggatccaaagaacacgcaggaccacgtccattcgttgtgt
ttgttagcctggcacaatggagaagaggtttatgaggatttctgcgccaaaattaggaca
actagtgttggcaagagtctgtatttaccaccatacaaatacttgtacagacagtggatt
gacctcttcatttga
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