Virgibacillus halodenitrificans: BME96_10580
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Entry
BME96_10580 CDS
T04548
Symbol
polC
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
vhl
Virgibacillus halodenitrificans
Pathway
vhl03030
DNA replication
vhl03430
Mismatch repair
vhl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BME96_10580 (polC)
03430 Mismatch repair
BME96_10580 (polC)
03440 Homologous recombination
BME96_10580 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vhl03032
]
BME96_10580 (polC)
03400 DNA repair and recombination proteins [BR:
vhl03400
]
BME96_10580 (polC)
Enzymes [BR:
vhl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BME96_10580 (polC)
DNA replication proteins [BR:
vhl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BME96_10580 (polC)
DNA repair and recombination proteins [BR:
vhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BME96_10580 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
DEDDh_C
DNA_pol_A_exo1
HHH_3
RNase_H_2
DUF1409
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
APC48598
UniProt:
A0AAC9IZW9
LinkDB
All DBs
Position
complement(2038913..2043202)
Genome browser
AA seq
1429 aa
AA seq
DB search
MDLSKSEKMNLLLKQLQIPSEHIQNHFKGSYLEKLEVYKKTKIWHFHIYLENVLPLEIHE
LFINALRESFQQVASVELTIQTGDSTCVNETVCAYWQRFIHSINNLSPAYKDLIYNQTPI
IQNNKLLLTARNEAEANALKKRLDDSFKKYCQKVGLSFYSIETTIKTEEADIQAFKEQKA
LEDQQLIQKTVQEKEKREQAKPNHENKPLMLGYKIQDEAIQMEDIQDEERRVTVQGYIFA
AEIRKLRSGRSLLIIKATDYTDSLQIKMFSKGDEDAEKFETVKKGMWIKARGSIQTDMYT
NELAMMANDIHEIRVEDRKDTSPEDEKRVELHAHTTMSQMDAVVSPETLVSQAAKWGHKA
IAITDHAGVQGFPDAHAAGKKNNIKVLYGVEINLVDDGVPIAYNVKDIELNNATYVVFDV
ETTGLSAVYDTIIELAGVKIHQGEIVDRFESFANPHHPLSQTTTDLTGITDEMVMNAPEV
AEVLSDFREWMGDCILVAHNASFDMGFLNQGFEKINFPKADNAVIDTLELARFLFPELKN
HRLNTLCKYLDIELTQHHRAIYDAEATGYLFWKLVQRLVDKEISNHKQLNNHMGEGNAYQ
RSRPFHCTLLAKTQDGLKNLYKLVSHAHIDYFYRVPRIPRSLLLKLREGILVGSGCDKGE
VFETMMQKSAEEAEKVAEFYDYIEVQPPANYSHLIEKDLVQNEAQILDIINKLIKLGDRM
NKKVVATGNVHYIDNHDKLYRQILIASQAGNPLNRQTLPDTPFRTTNEMLEAFQFLGVDK
AKEIIIHNPNELAEEIEEISPVKDGLYTPTIEGADQDIRDLCYNRAKKIYGEPVPQLVVD
RLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVGSRGSVGSSFVATMTEITEVNPLPP
HYVCLECHHHEFITDGTVGSGFDLPDKDCPACNKPLTKDGQDIPFETFLGFKGDKVPDID
LNFSGTYQPRAHNYTKELFGEDNVYRAGTIGTIAEKTAYGYVKGYASDKQLVYKNAEVDR
LVQGCTGVKRTTGQHPGGIIVVPDDKEIFDFTPIQFPADDKKSEWRTTHFDFHSIHDNLL
KLDILGHDDPTVIRMLQDLSGIDPKTIPTDDEEVMKIFSGTESLGVTPDQINCKTGTLGV
PEFGTKFVRQMLEDTKPNTFAELVIISGLSHGTDVWLGNAQELINDGICQLPDVIGCRDD
IMVYLMHKGLEASLAFKIMEFVRKGKGLQDEWITEMKKHGVPDWYIESCKKIKYMFPKAH
AAAYVLMAVRIAYFKVHHPIYFYAAYFTVRADDFELDTMIKGSSAIRTRMEEIYAKGNDA
SPKEKNLLTVLEISLEMCERGFGLNKVDLYKSSATEFIVEGDRLLPPFNAVDGLGTNAAL
SIVKAREEGEFLSKEDLRERSRISKTVLEYLDNHGCLEGMAEKNQLSLF
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atggatctatctaagagtgaaaaaatgaatttattgctaaagcaattacaaataccttca
gaacatatccaaaatcatttcaaggggagttacctggaaaagttagaagtatataaaaag
acaaaaatatggcatttccacatttatttagaaaatgttttgccattggagatacatgag
cttttcataaatgccttaagagaatcatttcagcaggtagcgtcagtggaattgacaatt
caaactggtgacagtacctgtgttaacgaaacagtttgtgcgtactggcaacggtttatt
cattccattaataatttatctccagcttacaaggatctgatctacaatcaaacccctatt
attcaaaataataaactattattaacggccagaaatgaagcagaagcaaacgctctaaag
aagcgtttggatgacagttttaaaaagtactgccaaaaagtgggtctttccttttactct
attgaaacaacaattaagacagaagaagcagatattcaggcatttaaagagcaaaaggcc
ttggaagatcagcaattaatccaaaagactgttcaggaaaaagaaaaacgagagcaagca
aaaccaaatcatgaaaacaaaccattaatgctcgggtataaaatacaagatgaagctata
caaatggaagatattcaagatgaagaacgtcgtgtcactgtccaaggttatatattcgca
gctgaaattcgtaagttacgttctgggcgaagtctattaataattaaagcaacggattac
acggattcactgcaaataaagatgttctccaaaggtgatgaggatgcagaaaaatttgaa
acagttaaaaaagggatgtggatcaaggcccggggtagtatccaaacagatatgtataca
aatgaattagctatgatggcaaatgatatccatgaaataagagtggaagatagaaaggac
acttcccccgaagatgaaaagcgtgttgaattacatgcacatacgacgatgagtcaaatg
gatgccgtggtctcaccggaaacgctggtttctcaggcagcaaaatgggggcataaagcc
attgcaataacagatcatgctggcgttcaaggctttccagatgcacatgcggccggaaag
aaaaataatattaaagtattatatggtgtagaaatcaatctggttgacgatggtgtgcct
atagcttataacgtaaaggatattgaattgaacaacgcaacatatgtcgtatttgacgtt
gaaactaccggtctttcagcagtttatgatactatcattgaacttgctggtgtgaaaatc
caccaaggagaaattgttgatcggtttgagtcatttgcaaatccgcatcatccgttatct
caaacgacaacagatcttaccggcattacagatgagatggtgatgaatgcaccagaagtt
gctgaagtgttaagtgatttccgcgaatggatgggagactgcatacttgtagctcataat
gccagctttgatatgggttttcttaatcaaggttttgaaaaaattaactttcctaaagcg
gataatgctgtaattgatacattggaattagccaggtttttatttcctgagttaaaaaat
catcgactgaatacgttatgtaagtatttggatattgagttaacgcaacaccatagagct
atttatgatgcagaagcaacaggttatttgttttggaaattagtgcaacggttggttgat
aaggaaatttcaaatcataaacaattaaataaccatatgggagaaggaaatgcctatcag
cggtcaagaccttttcactgtacattacttgctaaaacgcaggatggattaaagaattta
tataagctagtatcacatgcacacatagactacttttatcgtgttcctagaataccaaga
tccttactattgaaattaagggaaggaatattggttggttctggctgtgataaaggggaa
gtctttgaaacaatgatgcagaaatctgcggaggaagcggagaaggtggctgagttttat
gattacattgaagtacaaccacctgcaaactacagccatttaattgaaaaagacttagtc
caaaatgaagcacaaattttagatataataaataaattgattaaacttggcgatcggatg
aataaaaaagtggtcgcgactgggaatgtgcactatattgataaccatgataaattgtac
cgtcaaattttaattgcatctcaagcaggtaatccactgaatagacagacattgcctgac
actccttttcgtacaactaatgaaatgctggaagcttttcaatttttaggtgttgataaa
gcaaaagaaattattattcataatccaaatgagttagcagaagaaatagaggagatatca
cctgtcaaggatggattgtacactcctacaattgagggagcagatcaggatattcgagat
ttatgctataatcgcgcaaaaaaaatatacggagaaccagtaccacagcttgtagttgat
cggttggaaaaagagttgaagagtattataggtcatggctttgctgtcatctatctaatc
tcccacaagctggtaaaaaaatcgttggatgatggttatttagtcggttcaaggggttca
gttggatcttcctttgttgcaaccatgacagaaatcactgaagtgaatcctttgccacct
cactatgtttgcctggaatgccatcatcatgagtttataacagatgggacagttggtagt
ggatttgatttacctgataaggactgccccgcatgtaataaacctcttacgaaagacggg
caggatattccttttgaaacattcttaggatttaaaggagataaggtacccgacattgat
ttgaacttctcgggaacttatcaaccaagggctcataattatacaaaggaattattcgga
gaagataatgtttatcgtgccggtacgataggaactattgctgagaaaactgcatatggt
tatgtgaaaggctatgcttcagataagcaactcgtttataagaatgctgaggttgacaga
ctggttcaagggtgtactggagtgaaacgcacaacaggacagcatccgggtggcattatt
gttgtacctgatgataaagaaatatttgactttacaccaattcaattccctgctgatgat
aagaaaagtgaatggagaacaacccattttgatttccattctattcatgataatttgtta
aaattggatatactaggtcatgatgatccaactgttattcgcatgcttcaggatttaagt
ggaattgacccgaaaacaataccgacggatgatgaagaggttatgaaaatcttttcggga
acggaatctcttggtgtcactccagaccaaataaattgcaaaactgggactttaggggtg
ccggaatttggaacgaaatttgtccgtcaaatgcttgaagacacaaaaccaaatacattt
gctgagttggtaattatttcaggactttcacatggaacagatgtatggcttggcaatgca
caagaattaataaatgatgggatttgtcagcttcctgatgttattgggtgtcgtgatgat
attatggtataccttatgcacaaaggattggaagcatcacttgcatttaaaataatggag
tttgtacgtaagggaaaagggctacaggatgaatggataacggaaatgaaaaaacatggt
gtaccagattggtatatcgaatcctgtaaaaaaattaaatatatgttccctaaggcccat
gctgcagcatatgttctaatggctgtaagaattgcttattttaaagtgcatcatccaatc
tatttttatgcagcgtatttcacagttcgtgcagatgattttgaattagatacaatgata
aaagggtcatcagcaattagaacgcgaatggaagagatttacgcaaaagggaacgatgct
tctccgaaagagaaaaacctgttaacggtattggaaatctccttggaaatgtgtgaaaga
ggttttggtttgaataaggttgatctttacaagtcaagcgcgactgaattcatagtagaa
ggggatcgtttattacctccttttaacgctgtggatggtctcggaacaaatgctgcacta
agtatagtgaaggctagagaagaaggagaattcctatccaaagaagaccttcgggagcga
agcagaatttcaaaaactgtcttggaatatcttgataatcacggttgtttggaaggaatg
gctgagaagaatcaattgtctctcttttaa
DBGET
integrated database retrieval system
