Virgibacillus sp. NKC19-16: KFZ58_11460
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Entry
KFZ58_11460 CDS
T08697
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vik
Virgibacillus sp. NKC19-16
Pathway
vik03030
DNA replication
vik03410
Base excision repair
vik03420
Nucleotide excision repair
vik03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KFZ58_11460 (polA)
03410 Base excision repair
KFZ58_11460 (polA)
03420 Nucleotide excision repair
KFZ58_11460 (polA)
03440 Homologous recombination
KFZ58_11460 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vik03032
]
KFZ58_11460 (polA)
03400 DNA repair and recombination proteins [BR:
vik03400
]
KFZ58_11460 (polA)
Enzymes [BR:
vik01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KFZ58_11460 (polA)
DNA replication proteins [BR:
vik03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KFZ58_11460 (polA)
DNA repair and recombination proteins [BR:
vik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
KFZ58_11460 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KFZ58_11460 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
XPG_I
HHH_5
IMS_HHH
Motif
Other DBs
NCBI-ProteinID:
UJL45036
LinkDB
All DBs
Position
complement(2216973..2219612)
Genome browser
AA seq
879 aa
AA seq
DB search
MSNKLVLIDGNSIIYRAFFALPLLNNDKGVYTNGVYGFTTMLLRILEEEKPTHMLVAFDA
GKTTFRHETYKEYKGGRQKTPPELSEQFPLLRELLDAFQIAHYQLENYEADDIIGTLSTQ
EIDEGWDVTVISGDKDLLQLASDNVTVHLTKKGISEVEKYTPAFMKEKMEISPSQIIDLK
ALMGDSSDNIPGVPGIGQKTATKLLKQHNTLDEVYNHIDEVSGKKLKEKLETYKENAFMS
KDLVTIKRDSPITVKLDDLIFEGYQETKVSSIFKDLGFQSLLNKVDGESTSTEDNGNELT
DIDFSIVNEVTSDMFIGDAALVVEMIGENYHTAKVEGIGIVNETNAYYVPTDVALESDVF
KQWAEDGSQSKSVFDAKKSLVALLNQGIHLQGITFDMLLASYLINPSENNHDIPAIGNRM
GETNVLFDEEVYGKGAKLKVPEESILAEHVVRKASTLYSLKEDMEARLKANEQYELFIEL
EMPLTLILGEMEHVGVQADIQHLKEIGIDLKQRLNDLEKEVYELAGEAFNLNSPKQLGPI
LFEKLKLPVIKKTKTGYSTAADVLEQLKQEHEIIPKLLLYRQLGKLQSTYIEGLLKVVDK
DTHKIHTRFNQALTQTGRLSSMEPNLQNIPIRLEEGRKIRQAFIPAKKDWIMFAADYSQI
ELRVLAHIANDEKLVAAFNNDVDIHTQTAMDVFHVNKEEITANMRRQAKAVNFGIVYGIS
DYGLSQSLGITRKEAKAFIERYFASYPGVKTYMEEIVQEAKHHGYVTTLMKRRRYLPEIT
SRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDLDAKLKEASLESRMLLQVHDELIIEAP
KEEVDQLKKIVPATMEHTVDLNVPLKVDYAYGSSWFDAK
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaactcgttttaattgatggaaacagtattatttatcgcgctttttttgca
ttacctttattaaataatgataagggtgtatatacgaacggggtttacggatttacaacg
atgcttcttagaatcttggaagaagaaaaaccaacacatatgcttgtcgcttttgatgct
ggaaaaacaacatttcgccatgaaacctacaaagaatacaaaggtggtcgtcagaaaaca
ccgccggaattatcggagcagttcccactcttgagggaattacttgatgcatttcaaata
gcccattatcaattagagaattatgaagcggatgatattattggtacactttcgacgcaa
gaaatagacgagggttgggatgtaacggttatatcaggtgataaagatttactgcagctg
gcttctgataatgtaacggttcatttaacgaaaaagggaatcagtgaagtggaaaaatac
acccccgcttttatgaaggaaaaaatggagatatcacctagtcagattattgatttaaaa
gcattaatgggagacagttcggataacatacccggagttcctgggataggacagaaaacc
gctacaaaattattgaagcaacacaacactctggatgaagtttataaccatatcgatgaa
gtcagtggaaagaaactgaaggaaaaattagaaacgtacaaagagaacgcatttatgagt
aaagatctcgttacaatcaaacgtgattcccctataaccgtaaagcttgatgacttgatt
tttgaaggatatcaagagacaaaagttagtagcatatttaaagatctgggatttcaatca
ctgttaaataaagttgatggagaatcaactagcacggaggataatggaaatgaattaaca
gatattgatttttctattgtcaatgaagtcacatctgatatgttcataggagacgcggct
ttagtcgtggaaatgatcggtgaaaactatcatacggcgaaggtcgaagggattgggatt
gtaaatgaaacaaacgcgtactatgtaccgactgatgtagcgctggaatcagatgtgttt
aaacaatgggccgaggacgggagtcaatcaaaaagtgttttcgatgccaagaaatcatta
gtcgcattattaaatcaaggcatccatcttcaaggaattacatttgatatgctcctcgcc
tcttatttaattaatccatctgaaaacaatcatgatattcccgcaattggtaatagaatg
ggggaaacaaatgtcttatttgatgaagaggtctatggcaaaggcgcaaaattaaaagtg
cctgaggagtctattttagctgaacatgttgtgcggaaggcgagtacattatattccttg
aaagaagacatggaagcccgtcttaaagcgaatgaacaatatgaattatttatagagctg
gagatgccgcttacgcttatcttaggggaaatggagcatgtaggtgtacaggcggatatt
caacacctaaaagaaataggtattgatcttaaacagcggttaaatgatttggaaaaagaa
gtatatgaacttgccggtgaagcgtttaatttgaattccccgaagcaacttggacctatt
ctctttgaaaagcttaaactgccggttattaagaaaacaaagacagggtattcaacagca
gcagatgttttggagcaattgaaacaggaacatgaaattataccgaaactgcttttatac
agacagttaggcaagcttcaatcaacctatatcgaaggtctattgaaagttgtagataag
gatacacataaaatccatacacgctttaatcaggcattaacgcaaacaggaagattaagc
tccatggaaccaaacctgcaaaatattcctatccgtttagaggaaggaagaaaaatcaga
caagcatttataccagcgaagaaggactggatcatgtttgctgcagattattcacaaatt
gaattacgtgtgctagcacatattgcaaatgacgaaaagctggttgctgcttttaacaat
gatgtggatattcatacacaaactgcaatggatgtttttcatgtaaataaagaagaaata
actgcgaatatgcgacgtcaggcaaaagcggttaattttggcattgtgtacgggataagt
gattacggcctttcgcaaagcctcgggattactagaaaagaagcgaaagcatttattgaa
cgttattttgcaagttatccaggtgtgaaaacctatatggaagaaattgtccaagaagca
aaacaccatggttatgtgacgacattaatgaaacgcagaagatacctacctgagatcacg
agtcgaaacttcaatttgcgcagttttgctgaacgtacagcgatgaatacacctattcaa
ggcagtgctgcagatattattaaaaaagcaatgatcgatcttgatgctaagttaaaagaa
gctagccttgagtctcgtatgctgctgcaagtacatgatgaattaattattgaagcacca
aaagaagaagtggatcaactaaaaaaaatagtgccagcaacgatggagcatacggtagac
ttaaatgtaccattgaaagtagattatgcttatggaagcagctggtttgatgcaaaataa
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