Varroa jacobsoni: 111267986
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Entry
111267986 CDS
T07417
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
vja
Varroa jacobsoni
Pathway
vja03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111267986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vja03021
]
111267986
Enzymes [BR:
vja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111267986
Transcription machinery [BR:
vja03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
111267986
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
BUD22
Motif
Other DBs
NCBI-GeneID:
111267986
NCBI-ProteinID:
XP_022702360
LinkDB
All DBs
Position
Unknown
AA seq
1765 aa
AA seq
DB search
MADLDPMAVSSAVRSLSFTVLSTDEIKRQSVMEISNIQTFDLMGHPSRGGLYDGRMGALE
RDEVCDTCSLSQLHCPGHIGHIPLPLPAFNPVYFRDLHKLLRGSCFSCHRLLAPPAACQT
ILAQLQVLEYGLVGVAGEIEEIASEIINVMSQQKASLPDISSEVRRKIEEFLQNRQLSGD
DPRYAADVKNVVEMKHTLIKNFVQKYLMKPRKKCLFCGEIKTTVQVQEMARFIFTTGKAT
NRSVNLDNVERVLERSLYGNKSFVDDDDEMLALNENAEKNFLREEYSEGTAQTFFTAVQA
KKHLRDLWILEHVVMGYLFGSLREAQSRGMEHPTDLFFMDILAVSPPKFRPCNFMNGKKY
EHQLTACLNRILRTAHDLQDIIVVMKHKEQQHDTSTQDASSVKDQKMEMLTMNVNALEPA
GTNLNLKMHHYWKLLQMRINVLYDSDLDRNTKERAGVKQVLEKKAGLVRKHMMGKRVNFA
ARSVISPDPYINVDEIGVPMVFATRLSYPVPVTPRNVEQLRQAVINGPDIYPGALLVEFE
DGRKMRLDTSSRTKREAVAKTLLTPNPDGTLRNATKIVHRHLQSGDPLLVNRQPTLHKPS
IMAHKARILRDEKTLRLHYANCKSYNADFDGDEMNAHLPQSELGRSEACHIASVNQQYLV
PKNGAPLSGLIQDHVIGGTLLTMQDKFFTRNDYQSLVFNALTFLNRKIEVLSPTILKPVM
LWTGKQVVSTVILNCCPLNAPPPTVYGKTTVPVKAWPRTGKILDPTLTEDLVLIRDGELL
SGILDKAHYGPSQYGLVHICYELYGGETSSLLLSGFARLFTHYLQAFHGFTLGIHDILVT
EEADRKRRKIMRRGRRGGDKVVLEALNAQDEELTDEERTAKMRAGHLAREDRFLKNWDTV
MKNHTDSINNEINKACMPAGLQQAFPANNLQLMVQSGAKGGMVNCMQISCLLGQIELEGR
RVPLNIAGRSLPSFRPYDPAPRAGGFIDGRFLTGIRPQEFFFHCMAGREGLVDTAVKTSR
SGYLQRCLIKHLEGLMVNYDQTVRDSDGSVIQFQYGEDGLDILKMQMIQSPKQFSTLIRN
APILTDMDHIEQTKSVTNLELLGKMNARVARFHRKIAKGRRRESEFTIFCQQNEAEYKAA
YPDTNPGSRQPAYKARLIKAFYELNERDRRRLRKQVILSADTVTSKLRPDLHLGAIGEKL
SSEIDRYVEANPDRLILSSGCDLNEKKVVSPEDFRDMMHLIYQKSLACAGEPVGLLAAQS
IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASKNIATPSMNLPLKKVPLVESRA
EKLRLGISQVNLAQVIESVVVTDRLNVSASGRPFRVYQIRFNFLPYRTYKKTLYTNPSKI
LRFMETKFLKRFIESVRKKITLVKGARMVEIGSRSTRGNTTMDDNQDEGSSRINLNEEDD
GDSSGDDEGGEGETNIEFQREKHEDDRDYDEPEIEEYQKSDDEDDNGEIDEEQFAPTAEE
LRPRDPQTSESEMDTTRAQELAKRIKTKELKAQKKLRANNVINYHTWVTNYDFDTEREEW
CELTFQLELQYSKFDMASLVEEEARATVLHSVKGIQRAFLVKDNDDRSGCGKMLQTEGVN
FEEMFKYDDIIDMKRISSNDIYAISQVFGIEAATKAIVREVTSVFAVYGIKVDPRHLSLV
GDYMTFDGAYRAFNRIHMANNASPLQQMSFETTCTFMKNAALFGFSDRLNSPSARLVMGQ
LVGAGTGICDMLGNIPKRGNNKYAI
NT seq
5298 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcttgatccgatggctgtgtcgagcgcggtgaggagcctttcttttaccgta
ttatcgaccgacgaaatcaaaaggcagagtgtcatggaaattagcaatattcagacgttt
gatctcatgggtcacccgtcgcgcggaggattatatgatggaagaatgggtgctttagag
cgcgatgaagtctgcgacacatgttcgctatcgcaacttcactgtcctgggcacattggc
catattccgctcccgttgcccgcgttcaatcctgtctactttcgagatcttcacaaactt
cttcggggaagctgtttttcttgtcatcggcttctagcgccaccagctgcgtgtcaaacc
attcttgctcagttgcaggttttagaatatgggctcgtgggtgtggctggcgaaattgag
gaaattgcctccgagattattaacgttatgtcacaacagaaagcatcattgccagatatc
tccagcgaagttcgtagaaaaatcgaggaatttttacaaaaccgtcagctatccggcgat
gatccacggtacgcggccgacgtcaagaatgttgtagagatgaagcatacattgattaag
aacttcgttcaaaagtacctcatgaagccacgcaaaaagtgccttttttgtggtgaaatc
aaaaccactgtacaggttcaggaaatggccagatttatctttaccactggtaaggccaca
aaccgatctgtaaacctcgacaacgtggaaagggttttggaaagaagcctctacggcaat
aaaagcttcgttgatgacgatgacgagatgctcgctcttaacgaaaacgcagaaaaaaat
tttttaagagaagagtactctgagggtacagcccaaaccttttttacggcagtgcaagct
aaaaagcatcttcgcgatttgtggatcctggagcatgttgttatgggttatctgttcgga
tcattaagagaagcccagtccagaggaatggagcatcctactgatttgttcttcatggat
attttggctgtcagcccgccaaaattccgcccgtgtaacttcatgaacggcaagaagtat
gaacaccagttaacagcgtgtcttaatcgcattcttcggacagctcatgacttgcaagac
attatagtcgttatgaaacataaagagcaacaacacgacaccagtacacaggatgcatct
tcggtaaaggaccaaaaaatggagatgctcacgatgaacgttaacgcactggagccggcg
ggaacaaacctcaatttaaaaatgcaccattactggaaattgctgcagatgcgaatcaat
gtcctttacgattcagatctcgatcgaaacactaaagaacgcgctggtgtcaagcaggtg
ttagagaagaaggcaggattagtgcgaaaacacatgatgggcaagcgtgtgaattttgcc
gcacgttcagtcatctcgccagacccatacataaacgtagacgaaattggtgttccgatg
gtgtttgcgacacgcctttcgtatcccgttccagtgactccacgtaacgttgaacagctc
cgacaagccgtcattaatggacctgacatttaccccggtgctcttctggtagagtttgaa
gacggacgaaaaatgcggttagatacatcttcacgaacgaaacgtgaagctgtagccaaa
acgctattgactccgaatcctgatggaacattaagaaatgctaccaagattgttcatcgg
catctgcaaagtggcgatcctttgttggtcaaccgacaaccgaccctgcacaaaccttcg
attatggcgcacaaagcaagaatactccgggatgaaaaaactttacgattgcactatgct
aactgtaagtcatataacgccgattttgacggcgatgaaatgaatgctcatcttccgcag
agcgaattgggcagatccgaggcctgtcacattgccagtgttaaccagcagtaccttgtg
ccgaaaaacggtgctcctctgtcgggtttaatccaggatcatgtcataggtggaacattg
ctaacgatgcaggacaagttttttacgcgtaatgattaccagagcctcgttttcaatgca
cttactttcctcaatcggaagatcgaggttctttcgcctactattctgaagccggtgatg
ctatggactggcaagcaggttgtgtccaccgtgattttgaattgctgtccattaaatgcc
ccgcccccgacagtttatggaaaaacgacagtaccagttaaggcgtggccccgaacgggt
aagattctcgacccgacgctaaccgaagatctggtgttgatccgcgatggcgagttatta
tcaggtattttggacaaggctcattacggtcctagccaatacggacttgtgcacatctgc
tacgaactctatggaggcgaaacgtcttcgcttcttttgagcggtttcgccagactgttc
acacattacctacaggcatttcacggatttactcttggtattcatgacatcttggttaca
gaggaggccgaccgtaagcgtcgcaagattatgcggagaggtcgtcgggggggtgataaa
gttgtcctagaagctttaaacgcccaggatgaagaactaaccgatgaagaaagaacagcc
aagatgcgggccggccacttggcgagagaagatcgttttctcaagaactgggacactgta
atgaaaaatcacacagactcaatcaacaacgaaataaacaaggcctgtatgcctgctggc
ttgcaacaagcattccctgctaacaacctccaattaatggtccagtccggggccaaaggt
ggcatggtgaactgcatgcaaatctcgtgcctgcttggccagatcgaacttgaaggtcgg
agagtgccattaaatatagcaggacgctcactcccgtcatttcggccgtatgatccagct
ccccgtgcaggcggttttatcgacggacgcttcttaacgggaatccgtccgcaggaattc
tttttccattgtatggctggtcgcgaaggattagttgacacagctgtcaagactagtcga
tcgggatatttgcaaagatgcctcattaaacatctagaaggtctgatggtgaactacgat
cagacggttagagactccgatggttccgtaatccagttccaatatggcgaggatggtctc
gatattctcaaaatgcagatgatacagagcccaaagcagttctcaactttgatacgaaat
gctccaattttgacggatatggaccacattgaacagacgaaaagtgttacgaaccttgag
cttcttggaaagatgaatgctagagtagctcgcttccatagaaagattgcaaaaggtcga
cgacgtgagagcgaattcacgatattttgtcagcaaaacgaggcagaatataaagctgcc
tatccggataccaatccgggaagtcggcagccggcttataaagcgcggctaatcaaagct
ttctacgagctcaatgagcgcgataggcgccggctgcgcaaacaggtgatactttccgcc
gacactgtgacgagcaagctacgtcccgatttgcatctcggcgccatcggagaaaagcta
agctcagagatcgatcggtacgtcgaagcgaatcctgacagactcattctgtcgtccgga
tgtgaccttaatgagaaaaaggttgtgagtcccgaggattttagagacatgatgcatttg
atttatcaaaagtcactagcttgcgccggtgaaccagttgggcttctagctgctcagagt
ataggtgagccttcgacccagatgacgctgaatacgtttcactttgctggtcgtggtgaa
atgaacgtcacactaggaattccgcgtttgagagaaattttaatggtcgcctcaaagaac
attgcgaccccgtcaatgaacctgccacttaagaaagtgccgcttgtcgaatcccgagca
gaaaaactccggctaggcatttctcaggtgaatttagctcaagtaattgagtcggtggtg
gtcactgatcggctgaatgtttcggcgtccgggcgaccctttcgcgtatatcaaatacgc
ttcaattttttgccgtatcgtacctacaaaaagacgctttacacgaatccgtcaaaaata
ctgcgtttcatggagacgaagttcctgaaaaggtttattgaaagtgttagaaaaaaaatt
accctggttaaaggagctcgcatggttgaaatcggatcaaggtccacccgtgggaatact
acaatggacgataatcaagatgagggtagcagccgtataaacctaaacgaagaagatgac
ggcgactcttctggtgatgacgaaggtggtgagggcgagactaacatcgaatttcaacgg
gagaaacacgaagacgatcgagactacgacgagcctgaaatcgaagagtatcaaaaatca
gatgatgaagatgataatggcgaaattgatgaggaacagtttgccccaacggcggaagaa
ctgcgtcctcgcgatccgcaaacatctgagagcgagatggacacgacgagagctcaagag
ttagcgaaaagaatcaaaacgaaggagctgaaagctcaaaagaaattgcgtgctaacaac
gtaatcaattaccacacgtgggtaacaaattacgacttcgacacggagcgtgaagaatgg
tgtgagttgaccttccaactggaactacaatattcgaagtttgatatggctagtttggtt
gaagaggaggccagagcgacggtgctacattcggtaaagggtattcagagagctttcctc
gtgaaggacaatgatgacagatcgggttgcggcaaaatgctccagacggaaggtgtcaac
ttcgaagagatgttcaagtatgatgatataatcgacatgaaacgcattagctcgaacgac
atctacgcaatatcacaagtgtttgggattgaggctgcgacaaaagcaatcgttcgggag
gtgacatccgtgttcgccgtgtacggcatcaaagtggatccaagacatctaagtctggta
ggggactacatgactttcgacggagcttaccgcgccttcaacagaatccacatggcaaac
aatgcatcgccactccagcagatgagctttgaaacgacgtgcacatttatgaaaaacgct
gctttatttggtttctcggaccgactcaattcaccatccgctcgactagtaatgggtcag
ctcgttggggcgggcaccggaatttgcgatatgttgggaaatataccgaagcggggaaat
aacaaatatgcgatttag
DBGET
integrated database retrieval system
