Varroa jacobsoni: 111269507
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Entry
111269507 CDS
T07417
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
vja
Varroa jacobsoni
Pathway
vja03020
RNA polymerase
vja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111269507
09124 Replication and repair
03420 Nucleotide excision repair
111269507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vja03021
]
111269507
03400 DNA repair and recombination proteins [BR:
vja03400
]
111269507
Enzymes [BR:
vja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111269507
Transcription machinery [BR:
vja03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111269507
DNA repair and recombination proteins [BR:
vja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111269507
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
111269507
NCBI-ProteinID:
XP_022704891
LinkDB
All DBs
Position
Unknown
AA seq
1857 aa
AA seq
DB search
MAQIVTSDSKAPLREVREVQFGILDPDEIRRMSVTEGGIRYSETYEGNRPKLGGLMDPRQ
GVIDRSSRCLTCSGNMTECPGHFGHLELAKPVFHVGFLTKTLKVLRCVCYYCSRLLVSPN
HPRMREILQKTKHNQRQRLDKVYELCKVKQVCEGGDEIEKTGGQGEPTEEDKKAAHAGCG
RHQPNYRRSGLDLSAEWKHTNEETQEKKQMLTAERVYEIFKHITEEECYCLGMDERYAKP
DWMLLTVLAVPPLCVRPAVVMFGSARNQDDLTHKLSDIVKANNELIRNEQSGAGAHIITE
NIKMLQFHVATLYDNELPGLPRAMQKSGRPLKSIKQRLKAKEGRIRGNLMGKRVDFSART
VITPDPNLKINEVGVPRSIAQNLTFPEIVTPFNIERMQELVSRGNDQYPGAKYIVRDNGE
RIDLRFHPKASDLHLQCGYKVERHVQNGDIIVFNRQPTLHKMSMMGHKIRVLPWSTFRMN
LSVTTPYNADFDGDEMNMHVPQSLETRAEIEQLAMVPRQIITPQANKPVMGIVQDTLTAV
RKMTKRDVFLEKDQMMTLLMFLPIWNGKVPMPAILKPKPLWTAKQLFSLIIPGNVNLIRT
HSTHPDEEDDGPYKWISPGDTKVIIEHGELLSGIVCKKTVGASSGSLMHVLFVEMGHEVA
GLFYSHIQTTVNAWLLYEGHSIGIGDTIADQQTYMDIQNTIKKAKQDVIEVIEKAHNDEL
EPTPGNTLRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKSMVVSGAKGSKINISQVI
ACVGQQNVEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYLAGLTPSEFFFHAMGGRE
GLIDTAVKTAETGYIQRRLIKAMESVMVCYDGTVRNSNGQVIQFRYGEDGLDGACVEGQS
LPTVKPSNRQFEQKFRFDVTNEKILRKYYTEDVIKDLNGSANAVAEMEREWELLKKDREV
LRSIFPTGDSKVVLPCNLGRMIWNAQKTFRVNTRGKTDLSPLRVIEGVDDLVKKLIIVPG
DDHLSIQANENATLLFRALLRSTLCSRRVGQEFRLSTEAFEWLLGEIEARFHQSQGQPGE
MVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKQPKTPSLTVFLKG
ASARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQDFVNVYYEMPDFDPT
RISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNSE
GEKFTEEAEEQADKMEDDVFLRCIESNMLSDMTLQGIEAISKVYMHLPTTDDKKRIVLTD
TGEFKHISEWLLETDGTSLMRVLSERDVDPVRTYSNDIIEVFSVLGIEAVRKAVEKEMNH
VISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDILMDAAF
HAESDKLKGVSENIILGKLARMGTGAFDLMLDCEKCKAGIEINMAMPGIDGLPGQGPFFG
SAGTPLGSPQMTPWNAGQTPGYGMWSPTAGMTPGAGGAFSPSTQSESAFSPAYSPAYSPA
QSPGSPSSPAYYSPSHPGAASPSYSPHLGAASPSYSPSSPSYQLTSPTYSPSSPQYGGTS
PSTPSYSPSSPSYSPSSPTYSPTSPSYSPSSPNYPTTSPTYSPSSPSYSPSSPSYSPTSP
SYSPSSPSYSPTSPSFSPSSPTYSPTSPSYSPSSPKYSPASPSYSPASPKYSPSSPSYSP
STSSYTSHTSHRYSPASPSYSPSSPTYSPSSPTYSPSSPNFTPTAPSYSPSSPKYSPSSP
TYSPSSPTYSPSSPTYSPSSPQHSQAHYSPSSPTYTPTSPAYSPVYAPASGDDSDQE
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaatcgtcacgtcagattcgaaggccccgctgagggaagtgcgggaggtccag
ttcggcattctcgatcctgacgaaatccgtcggatgtccgtcaccgaaggtggaattcgt
tattcggagacatatgaaggaaaccggccgaagttgggtggcttaatggaccctagacag
ggtgtcattgaccgttcttcgcgttgtcttacctgttcaggtaatatgaccgaatgcccg
ggccactttggtcacctcgaacttgccaagcccgtgttccacgttggattcctgacgaaa
accctgaaggtgcttcggtgtgtctgctactactgcagtaggcttctcgttagtccaaat
catcctcgcatgagggagatccttcagaaaacaaaacacaatcaacgacaacgattagac
aaagtttacgagttgtgcaaggtcaaacaggtttgtgaggggggcgacgagattgagaag
accggtgggcagggcgaaccaacggaagaagataaaaaagcggctcatgccggctgtggc
cgtcaccagccaaactatcgtagatcagggcttgacttgagcgcagaatggaagcataca
aatgaggagactcaggagaaaaaacaaatgctcacggccgaacgagtttacgagatcttt
aaacacatcaccgaagaggagtgctattgcctcggcatggatgagcgttacgccaaacct
gattggatgttgcttaccgttttggctgtgccgccactgtgcgtgcgtcccgctgttgtc
atgtttgggtcggcccgtaatcaagacgatcttacgcataaactgtccgatattgttaaa
gcgaacaacgaactgattcgcaatgagcaaagcggtgccggagcgcacattatcaccgaa
aatattaaaatgctacagtttcatgttgcgacgctgtacgacaatgagctgccgggtctg
ccacgagctatgcagaaatcgggcaggccactcaagtcaatcaagcaacgactgaaggcc
aaagaaggtcgtatccgaggtaaccttatgggaaagcgtgtcgacttctcagcacgtact
gttatcacccctgatcccaatttgaaaatcaacgaggttggtgtgccaagaagcattgca
caaaacctcacgtttccagagatcgtcacgccattcaatattgaacgcatgcaagagctg
gtttccagaggaaacgatcagtatccaggggcaaagtacattgtcagggataacggcgaa
cgtattgatctgcgtttccacccgaaagcatccgacctccatctgcagtgcggctacaaa
gtggaacgtcacgttcagaacggcgatatcatcgtgttcaatcgccagcccacactacat
aaaatgagtatgatgggtcataagattcgcgtgttgccatggtcaacattccgaatgaac
ctgtccgtaacaactccgtacaacgccgattttgacggcgacgagatgaatatgcatgtg
ccacagtcgctcgaaactcgcgccgaaattgagcagctggccatggtgccccgacagatt
atcacgccacaggccaacaagcccgttatgggtattgtgcaggatacgttgacagcggtc
cgtaaaatgacgaaacgtgacgtattcctcgagaaagatcaaatgatgacgctgcttatg
ttcttgccgatctggaatggtaaggtacccatgccagctattcttaaaccgaaaccgtta
tggacggcaaagcagctattctcgttaattattcctggtaacgtaaatctgattcgaaca
cattcgacgcatccggatgaggaagacgatggaccatacaagtggatttctccgggagat
accaaagtcataattgaacacggcgaattgctatcaggcatcgtgtgtaagaaaactgtc
ggagcctcttccggatctctgatgcacgtgctgttcgttgagatgggtcacgaagtggcg
ggcctcttttattctcacattcagacgacagtcaatgcgtggctattatatgaaggtcat
tcaattggtatcggcgatactattgctgatcaacagacctatatggacatccagaacacg
attaagaaagcaaaacaggacgtgatagaagtaattgagaaggctcacaacgacgagctt
gagcccacgcctggtaacaccttgcgacaaacgttcgaaaatcaggtgaaccgaatttta
aacgacgctcgtgataagactggtggatctgcccagaaatctctgtccgaatttaacaac
ttcaaatcgatggtggtatccggcgcgaaggggtcgaaaattaacatatctcaagttatt
gcctgtgtgggtcagcagaacgttgaaggaaaacgtattccattcggcttccgaaagagg
acgctaccccattttatcaaagatgatttcggtcccgagtctcgaggatttgtcgagaac
tcatacctcgccggactcacaccatcagaattctttttccacgctatgggaggtcgtgag
ggtcttatcgataccgctgtgaaaactgctgagaccgggtacatccagcgacgtctcata
aaggctatggaatccgtcatggtctgctacgatggaacagtacgaaattcgaacggacag
gttatccagttccgttacggagaggacggcctggacggagcctgcgtagaaggtcaatcc
ctgcctacggttaagccatcaaataggcagtttgaacagaaattccgtttcgatgtgaca
aatgagaagatcttgcgtaaatactacaccgaagatgtaattaaggatctgaatggttcc
gctaatgctgttgctgaaatggaacgcgaatgggaactgctgaagaaagatcgcgaggtc
ctacgaagtatttttcctacaggagacagtaaagtcgtgttgccttgtaaccttggtcgt
atgatttggaacgcccaaaagaccttccgtgtgaacactcggggaaagaccgatctcagt
ccgctgcgcgtcatcgaaggcgtcgatgacttggtgaagaaattaatcattgtacccgga
gatgatcacctttcaattcaagcgaatgaaaacgccactcttctatttagagccctgttg
cggtcaactttgtgctcgcgtcgtgttggccaagagttccgcttatcaacagaggcgttc
gaatggctccttggtgaaatcgaagctcgatttcaccaatcgcagggtcagcctggtgaa
atggtcggtgcgttggccgcccagtctctcggagaacctgctactcagatgacactgaat
acttttcactatgcaggtgtgtcagctaaaaatgtaacactcggtgtaccacgactgaag
gagattatcaatatctcgaagcagccaaaaaccccctcgctaaccgtttttcttaagggt
gcctcggctcgtgatgccgagaaagcgaaggatgtgctgtgtcgcttggaacacacaact
ctacgcaaagttacggcaaatacagccatctactacgatccagatccgcaaaacaccgtc
atagcggaagatcaggacttcgtgaacgtctattacgagatgcctgacttcgatccgacg
cgcatttcaccgtggctacttcgtattgaacttgaccgcaagagaatgacggacaagaaa
ctcactatggaacagattgccgagaagatcaacgccggctttggagatgacctcaactgt
attttcaatgacgacaacgccgataagctcgttctgcgcattcgcatcatgaacagcgaa
ggcgagaagttcacggaggaagccgaagaacaggctgataagatggaggacgatgtattc
ctccgttgcattgaaagcaatatgctatccgacatgacattacagggtattgaagcgatc
tcgaaggtgtatatgcatctacccaccacggacgacaaaaagcgcatcgttcttacggac
acaggcgaattcaaacacatttcagagtggctgctcgaaactgacggtacatcattaatg
agggttttgtctgagcgtgatgtcgaccctgtgaggacgtactcaaacgacatcatagaa
gtgttctcggtgctcggcatagaggctgtgcgaaaggccgtggagaaagaaatgaatcac
gttatctcgttcgatggttcatacgttaactatcgtcatttggcgttgctttgtgacgtt
atgacagctaagggtcacttaatggccatcactcgacatggtattaatcggcaggatact
ggagctttgatgagatgctccttcgaagagacggttgacattcttatggatgcagctttc
catgccgagtcagacaagctgaagggtgtgtctgagaatatcattctcggcaagcttgca
cgtatgggtactggcgctttcgaccttatgcttgactgcgaaaaatgcaaagctggtatc
gaaatcaacatggccatgcctggtatcgacggactacctggccaaggacctttcttcggc
tctgccggcactccactgggtagtccacaaatgacgccttggaacgctggtcaaacgcca
ggctacggcatgtggtcaccaacggccggcatgactccaggtgccgggggtgctttctcg
ccatcaacacagagcgaatctgcattctcgccagcatattcgccagcatattcaccggcg
cagtcccctggctcaccatccagcccggcctattattcgccttcacatcctggcgccgcc
tctccctcgtatagtccccacttgggcgctgcttcccctagctattcgccatcttcgccg
agctatcagctcacgtcgcccacgtacagtccgagcagtccacaatacggtgggacatca
ccgtcgacaccgagctattctccatcatcaccatcgtattcaccttcatcaccaacgtac
tcccccacgtccccctcgtacagtccgtcatcaccaaactaccccacaacaagccccacc
tattcgccgtcttcaccatcatattcgccatcttcaccctcgtattcgccaacgtcgccg
tcttattcaccttcttccccgtcgtattctccaacctcgccatcgttctcgccttcgtca
ccaacctattcccctacttcgccgtcgtacagtccttcgtcgccgaagtacagcccggcc
tccccctcatactcaccggcttcaccgaagtactcaccatcttcaccatcatactctcct
agtacttcatcctatacatcacacacatctcatcgctattcgccagcgtcaccttcttat
tcgccatcatccccaacatattctccttcatcgcccacttattcaccgtcctcaccgaac
tttaccccgactgctccatcgtattcgccttcgtccccgaagtactccccgtcctcacca
acgtattcaccgtcatcgcccacgtattcgccctcatcgccgacatattcaccgagctca
cctcaacactcgcaggcccattactcaccgtcgtcgccgacgtacacgccaacgtctccg
gcatattcgccggtgtatgcgcctgcgtcgggtgatgattcagatcaggagtag
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integrated database retrieval system
