Veillonella nakazawae: VEIT17_08760
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Entry
VEIT17_08760 CDS
T06972
Symbol
polC
Name
(GenBank) DNA polymerase III PolC-type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
vnk
Veillonella nakazawae
Pathway
vnk03030
DNA replication
vnk03430
Mismatch repair
vnk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vnk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VEIT17_08760 (polC)
03430 Mismatch repair
VEIT17_08760 (polC)
03440 Homologous recombination
VEIT17_08760 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vnk03032
]
VEIT17_08760 (polC)
03400 DNA repair and recombination proteins [BR:
vnk03400
]
VEIT17_08760 (polC)
Enzymes [BR:
vnk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VEIT17_08760 (polC)
DNA replication proteins [BR:
vnk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VEIT17_08760 (polC)
DNA repair and recombination proteins [BR:
vnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VEIT17_08760 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
DUF655
HHH_3
YhfH
Motif
Other DBs
NCBI-ProteinID:
BBU34430
LinkDB
All DBs
Position
997460..1001251
Genome browser
AA seq
1263 aa
AA seq
DB search
MKVRYRVVPKQNKKSSFYVNCHSQHVTIQAADSAFSTLLSLRERLSAWYKEKNISFDNIP
TNTDTACCFAWKVDTETGEGLDTYYYGGGCGAGEWIEAAEAQREAEEAKNKVPRGKSFAG
YDQEDEYDDVDEDDFAPFVEAVELGYFNNSPVVVSRSNQTAAASSNSDTVASVSSTPKAS
KGFAPKSTTKSTAKGSEGDSKYPRRAPKDAPTDEGMILGPKIEGVTSKIMGTLDTPSVIF
EGVFVGLDKRDTKTGKSIVNGSIVDDTNSIKFIKFANSPEEGDALLKQLKGLQRVRVQGS
VSFDDRFDKDYILSIRSIEAMETNSVERTENRPDSRVELHLHTKMSDKDALVSVKDLFKT
VKKWGHPAVAITDHGVVQAFPEAQALGKELGVKVIYGVEGYLIDDEIVARDEEPVVDKKK
KKEKDKRYHIILLAKNMVGLRNLYKMISISHLEHYKIRPRLPRSVIEEHREGIIIGSACE
AGELMQSIVRGATKEELLEVASFYDYLEIQPHTNNMFLVRKGLMPDEQALIDMNKTVIEL
GEALNKPVCATCDVHYLTPEEKIYREIMLTACGYPDADEQPDLHLRTTDEMLASFPYLSE
EKAYEVVVTNTRAINDSIEDIKPVPDGTYSPKIEGADEAFTEMCYRNAKAIYGDPLPRVV
QERLDYELDCIISNGYGVLYYIAHKLVKKSLDDGYLVGSRGSVGSSFAATMSEITEVNPL
PPHYICPNCKHSEFFEKGEYAGGFDLPRKDCPECGHALQTNGHDIPFAIFLGFEGDKVPD
IDLNFSGDYQAKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKYAEIRDIQARSGFF
EHLAKGFTNVKNTTGQHPGGIMVCPRDMDVHHFTPIQHPANKKESGVLTTHFDYHSIEGR
MTKLDILGHDDPTIIRMLEDLTGIDAKTIPFDDPKTLSLFSSTEGIGLTPEQLQGDQVAS
LAVPECGTKFVRGMLEDSRPQTFSDLVRISGFSHGTNVWLDNAQDLIKNGTCKLNEAIST
RDDVMNFLIHRGMDRKHSFFVMENVRKGKGIEKRNKQGQAITEFEAEMRENNIPEWFIES
CKKISYLFPRAHAVAYVMMAFRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQMT
EFNRIKALDRGASPKDKDLMSALEVSMEMYQRGYRFVNVDIQHSEARRFSIKDGALLPPF
LAIDSLGETVADAIVAEREERPFTSLKDLQRRCKVSNTIIDLMKELKCCGELPEDEQMSL
FGA
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtacgttatcgtgttgtaccaaaacagaataagaaatcatccttctatgtaaac
tgtcatagccaacatgtgacgatacaagctgcagattctgcgttttctacattgcttagt
ttgcgtgaaagattatctgcatggtataaggaaaaaaatatttcttttgataatattcca
acgaatacagatacagcttgttgttttgcctggaaggtagatactgaaacaggggaaggc
ttagatacctattattatggtggtggctgtggtgctggtgaatggattgaagcggcagaa
gcgcaacgtgaagctgaagaggctaaaaacaaagtgcctagaggcaagtcttttgctggt
tatgaccaagaagatgaatatgatgatgttgatgaagatgatttcgctccatttgtagag
gctgttgagctgggctactttaataatagtcctgtcgttgtatctcgttctaatcaaacg
gctgcagcatctagcaatagtgatactgtcgcatctgtgagcagtacacctaaagcaagt
aaaggttttgctcctaaaagtactacaaaatctactgctaaaggtagtgaaggggatagt
aaatatcctcgtcgtgcccccaaggatgctcctactgatgaaggcatgattttagggcct
aaaattgagggagttacctctaaaattatgggcactttggatacgcctagtgttattttt
gaaggtgtatttgttggtctagataaacgtgatactaagactggtaaaagtatcgttaac
ggtagcatcgtagacgatacgaatagcatcaaatttattaagtttgcgaatagccctgaa
gaaggggatgcgctacttaaacaattaaaaggtttacaacgtgtacgcgtacaaggtagc
gtcagctttgatgatcgatttgataaggattatatcttatctattcgaagcattgaagct
atggaaactaatagcgtggagcgcactgaaaaccgtccagactcccgtgtagagctgcac
ttgcatactaagatgagtgataaggatgcccttgtatctgttaaagacctatttaaaaca
gtaaaaaaatggggtcatcctgcggtagctattacagatcacggcgttgtacaagcattt
ccagaagctcaagctcttggtaaagagttgggcgttaaggttatctacggtgtagaaggt
tatctcattgatgatgaaattgttgctcgtgatgaagagcctgtagtagataagaagaag
aaaaaagaaaaagataaacgttaccatattatcttattagctaaaaatatggtaggtttg
cgcaatctgtacaagatgatatctatttctcaccttgaacactataagatacgccctcgg
ttgcctcgttctgttattgaagaacatcgtgaaggtatcatcatcggttctgcttgtgaa
gccggggaacttatgcagtccatcgtccgtggtgctacaaaggaagaattactagaggta
gcctctttctacgactatcttgaaattcagccacatacgaacaatatgttcttggttcgt
aaaggccttatgccagatgagcaagctcttatcgatatgaataagacagttatcgaatta
ggggaagctttaaataaaccagtatgtgctacttgtgacgttcattatttaacaccagaa
gaaaagatttaccgtgaaatcatgttaacggcatgtggttatccagatgcggatgaacaa
ccagatttgcacttacgtactacagatgaaatgttggcgtctttcccgtatttaagtgaa
gaaaaggcttatgaagtagttgttactaatactcgtgcaattaatgatagcatcgaagat
attaaaccagttccagatggcacatattcaccaaagattgaaggtgccgatgaagctttc
acagaaatgtgttatagaaatgcgaaagccatttatggtgatccattgcctcgcgtagta
caagagcgacttgattatgaattagactgtattatctccaatggttacggcgtattgtat
tacattgctcataagctggtaaaaaaatcacttgatgatgggtatctcgtaggttcccgt
ggttctgtaggttcttcctttgcagcaaccatgtctgaaattacagaggtaaatccatta
ccgccacattatatatgccctaattgtaagcattctgaattctttgaaaagggcgaatac
gcaggtggctttgacttaccacgtaaagattgtccagagtgtggtcatgcgctacaaact
aatggccatgatattccgtttgccatcttccttggtttcgaaggtgataaggttccagat
attgaccttaacttctccggtgattaccaagcaaaggctcacaaatatacggaagaatta
tttggtcgagataatgtatttaaagctggtaccatcggtacaatagctgataaaactgct
tttggttatgttaaaaaatatgcagaaattcgagatattcaagctcgtagtggtttcttt
gaacatttagcaaaaggctttaccaatgttaagaatactactggacaacatcctggcggt
atcatggtatgtcctcgcgatatggatgtgcatcactttacacctatacaacatccagcg
aataagaaggaaagtggtgtattaacaacacactttgactatcactctatcgaaggccgt
atgactaagcttgatatcttggggcatgatgatccgactatcattcgtatgctagaggat
ttgaccggtatagatgctaagacaatcccatttgatgatccaaagacattgagcttattc
tcttctacagaggggattggtttaacacctgagcaattacaaggtgaccaagtagccagt
ttggctgtgccagaatgtggtacgaagttcgtacggggcatgctggaagactctcgtcct
caaacattctctgacttggttcgtatctctggtttctctcatggtacaaacgtatggctc
gacaatgcgcaagacctcattaaaaatggtacttgtaaattgaacgaagccatttctacc
cgtgacgatgtaatgaacttcttaatccatcgcggtatggatagaaagcatagcttcttc
gttatggaaaacgtacgtaaagggaagggcatagaaaaacggaataaacaaggtcaagct
attacggaatttgaagctgaaatgcgggaaaataatattcctgaatggttcattgaatct
tgtaaaaagatttcctatctattcccacgggcccatgctgtagcttatgtaatgatggcc
ttccgtatcgcatggtttaaggtgtaccatccattggctttctatgcagcctacttctcc
attcgtgccaaggcctttgatttgcgcattatgacgggtgaccttaaaacgcaaatgact
gagttcaatcgtattaaagctcttgatcgtggtgccagtcctaaagataaggaccttatg
agtgccttagaagtatctatggaaatgtatcaacggggttatcgttttgttaatgtagat
attcaacactctgaagctagacgctttagcattaaagatggtgctctattaccaccattc
ttagctattgactccttaggtgaaacagtagctgatgctatcgtagctgaacgagaagaa
cgtccgtttacatctctaaaagacttgcaacgtcgttgtaaagtatctaacaccatcatt
gatcttatgaaagaactcaaatgctgtggtgaactacctgaagacgaacaaatgtcactc
tttggagcataa
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