Vibrio parahaemolyticus RIMD 2210633: VPA0088
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Entry
VPA0088 CDS
T00120
Name
(GenBank) oligogalacturonate lyase
KO
K01730
oligogalacturonide lyase [EC:
4.2.2.6
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa00040
Pentose and glucuronate interconversions
vpa01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
VPA0088
Enzymes [BR:
vpa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.6 oligogalacturonide lyase
VPA0088
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GFIT
Motif
Pfam:
Pectate_lyase22
PD40
Methyltransf_21
Motif
Other DBs
NCBI-ProteinID:
BAC61431
UniProt:
Q87K10
Structure
PDB
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Position
2:81003..82169
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AA seq
388 aa
AA seq
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MAKGDVITLNFETFVDSDTQVKVTRLTPTDVICHRNYFYQKCFTQDGKKLLFAGDFDGNR
NYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTV
DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL
EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESC
THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGD
GCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTP
NDDGVLFTSDFEGVPAIYIADVPESYKH
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaggtgatgtgattactctcaacttcgaaacgtttgttgatagtgatacccaa
gtgaaagtgacgcgattaacgccaacggacgtgatttgtcaccgtaactacttttaccag
aagtgctttactcaggatggaaaaaagctgctgtttgcaggtgatttcgacggaaatcgc
aactattacctgcttaaccttgaaacgcaacaagcagtccaactgacggaaggtaaaggt
gacaacacctttggcggtttcatttcgacggatgagcgtgcatttttctacgtgaaaaac
gaactgaatttgatgaaagtcgatttagagacgctggaagaacaagtcatttatacggtc
gatgaagagtggaaaggctacggtacttgggtggcaaattctgactgtaccaagttagtt
ggcatcgagattttaaaacgtgattggcaaccgctgacatcgtgggaaaagtttgccgag
ttctaccacaccaatccaacttgtcgcttaattaaagtggatatcgaaaccggtgagctg
gaggtgatccatcaagacactgcgtggctaggtcacccgatttaccgtccgtttgatgac
tcaacggttggtttctgtcatgaaggtccgcatgatttggtggatgcgcgcatgtggcta
gtcaatgaagatggcagcaacgttcgtaaaatcaaagagcacgcagaaggtgaatcgtgc
acgcacgagttctggattccagatggcagcgcaatggcgtacgtttcttacttcaaaggt
caaactgatcgcgtgatttacaaagccaacccagagacattagagaatgaagaagtgatg
gtgatgccaccttgctctcacttaatgagtaacttcgatggttctttgatggttggtgat
ggttgcgatgcgccagtcgatgttgcagatgcagacagctacaacatcgaaaatgacccg
ttcttgtatgtattgaacacaaaagcgaaatcggcgcaaaaactgtgtaagcacagcaca
tcttgggatgtgttggatggcgatcgccaaattactcacccgcatccgtcattcacaccg
aacgatgatggcgtgttgtttaccagcgactttgaaggcgttcctgcgatttacattgcg
gacgtgccggagtcttacaaacactga
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