Vicugna pacos (alpaca): 102543264
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Entry
102543264 CDS
T08098
Symbol
CDKAL1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpc03016
]
102543264 (CDKAL1)
Enzymes [BR:
vpc01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
102543264 (CDKAL1)
Transfer RNA biogenesis [BR:
vpc03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
102543264 (CDKAL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
102543264
NCBI-ProteinID:
XP_006198672
UniProt:
A0A6J0ADF6
LinkDB
All DBs
Position
20
AA seq
583 aa
AA seq
DB search
MPSASCDTLLDDIEDIVSQEDSKPQDRHFARKHVVPKVRRRNTQKYLQEESSPPSDSTIP
GIQKIWVRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRN
SIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQ
KKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYLIDELVDR
AKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPTLLWKLVEVIPEGAMLRLGMTNPPYILEH
LEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGITIATD
IICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLS
RVFHSYNPYDHKVGERQQVLVTEESFDCKFYVAHNRFYEQVLVPKNPTFLGKMVEVDIYE
SGKHFMKGQPVSHAKVHTPSISKPLAKGEVSGLTEEFRNRLGHHLNSISHSPAATPRDSA
SSRMARQLQRLHQDCALRLSVGMALFALLFAFLVKVYNENITN
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgccttctgcatcctgtgatacgctactggatgacatagaagatattgtgtcacaagaa
gattcgaagccacaagatcggcattttgcaagaaagcacgttgttccaaaggtgcgaagg
cgcaacacccaaaaatatttacaagaggaaagcagtccaccaagtgatagcactattcca
ggcatacagaaaatttgggtacgaacatggggttgttctcataataattcggatggagaa
tatatggctggacaactagctgcttatggatataaaattacagaaaatgcatcagacgca
gatttatggcttctgaacagttgtactgtaaaaaatccggctgaagaccactttagaaac
tcaattaaaaaagctcaagaggagaacaagaaaatagtgctggctggatgtgttcctcaa
gcccagcctcgccaggactaccttaaaggactgagtatcataggggttcaacagatagat
cgagtggtagaagttgtggaggaaacaattaaaggtcactccgtgagactgctgggtcag
aaaaaggataatggaaaacggctggggggagcacgattagatttgccgaagattagaaag
aatccgctgatagagatcatttccatcaatactgggtgtctcaatgcttgtacctactgc
aaaactaaacacgccagaggaaatttggccagttacctgattgatgaactagttgataga
gccaagcagtcttttcaagagggcgtttgtgagatatggttgaccagcgaagacacaggg
gcttatggcagagatattggcaccagtctccccacactactgtggaagctggttgaagtg
attccagagggagcaatgctgaggcttggcatgacaaatccaccctatattttagagcat
ctggaggaaatggcaaaaatcctcaatcatccccgagtctatgctttcctgcacataccg
gtccagtctgcctctgacacggtgctcatggaaatgaaaagagaatactgcgtggctgac
ttcaaaagagtcgtggattttctgaaagagaaagttcctggaataactattgctacagac
attatctgtggttttcctggagaaacagaccaagattttcaagaaacagtgaaacttgtt
gaagaatacaagtttccaagcctctttattaaccagttttacccaagaccaggaactcct
gctgcaaaaatggaacaagttccagcacaagtgaaaaagcaaagaacaaaagatctttct
cgcgtgtttcattcttacaatccctatgatcacaaggttggtgaaagacaacaagtgtta
gtaacggaagaatcttttgattgcaagttttacgttgcacacaatcgattctatgagcag
gttttagtgccaaagaaccccacattcctggggaaaatggtcgaagtggacatttatgaa
tcaggaaaacacttcatgaaagggcagccagtatcacatgccaaagtacacacgccatcc
atcagcaaaccattagcaaaaggagaagtctcgggtttaacagaggaattcagaaatagg
cttgggcatcacctgaactcaatatcccacagcccagctgcaactccacgggactcggca
agttccagaatggcacggcaactgcaaaggctgcaccaggactgtgcgctgaggctgtct
gtgggcatggctctgtttgctcttctttttgcttttttggtcaaggtctataatgaaaac
ataactaactga
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