Variovorax paradoxus B4: VAPA_1c03920
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Entry
VAPA_1c03920 CDS
T02835
Name
(GenBank) putative methylcrotonoyl-CoA carboxylase, subunit alpha
KO
K13777
geranyl-CoA carboxylase alpha subunit [EC:
6.4.1.5
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00907
Pinene, camphor and geraniol degradation
vpd01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
VAPA_1c03920
Enzymes [BR:
vpd01000
]
6. Ligases
6.4 Forming carbon-carbon bonds
6.4.1 Ligases that form carbon-carbon bonds (only sub-subclass identified to date)
6.4.1.5 geranoyl-CoA carboxylase
VAPA_1c03920
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Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
Biotin_carb_N
Biotin_carb_C
Biotin_lipoyl
Biotin_lipoyl_2
Dala_Dala_lig_C
HlyD_3
ATP-grasp
RnfC_N
LpxI_N
NQRA
Motif
Other DBs
NCBI-ProteinID:
AGU47522
UniProt:
T1X3N5
LinkDB
All DBs
Position
1:complement(417820..419832)
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AA seq
670 aa
AA seq
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MSAAPGRPKQARAAARSAEASRCFHKILVANRGEIAVRVMRTARALGYRTVAVYSSADAD
AEHVRQADQAVWIGEPLPAQSYLNIVAIVEAARSSGAEAVHPGYGFLAENAEFAQACRDA
RLVFIGPSPEAIRAMGDKAGAKRLMQAAGVPCIPGYQGEDQSAATLAAEAARIGWPVMIK
ATAGGGGRGMRLAPSADAFAELLQSAQSEALHAFGDATVILERAIAAPRHIEIQVFADRH
GNAIHLGERDCSVQRRHQKLIEETPSPAVSGALRERMGATAVAAAEAIGYEGAGTLEFLL
DAKGEYWFMEMNTRLQVEHPVTEAVTGLDLVELQLRIAAGEPLPLAQQDVRMSGHAIEVR
LCAEVPQQGFVPQSGTLAAWRPSAALRIEHALRDGAAVPPFYDSMIAKLVAHGRTREEAR
RRLIAGLQDTVALGLATNQRFLQRALSHPAFAGGSATTAFIAEHAEALLAPDPAMERRAA
WLAALLLQLGERGWPSPLAHTLPNALRFSLDGMVHAARVTPQGAGRFDVALDAAAPARIE
LLSLAGDGALCFSCDGVSEQAMAVRESAVRQWIHFRGQAFEFQDLTHVAVPRTGAAGGDG
LLRASMNGRVVALLVAEGDAVAAGQPIATLEAMKMEHVHCAPRAGRVAALHVTVGAQVAA
RHVVAEIADA
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcagcgccgggccgccccaagcaagctcgcgccgcagcgcgaagcgcggaggct
tcccgatgtttccacaagatcctcgtcgccaaccgcggcgagatcgcggtgcgcgtgatg
cgcaccgcgcgcgccttgggctatcgcacggtggccgtgtattcgagcgccgacgccgat
gcggagcatgtgcggcaggccgaccaggccgtgtggatcggcgagccgctgcctgcgcaa
agctatctgaacatcgtcgccatcgtcgaagccgcgcgttcgagcggcgccgaagcggtc
catccgggctacggcttcctggcagagaacgccgagttcgcgcaggcctgccgcgatgcg
aggctggtcttcatcggcccttcgcctgaagccattcgcgccatgggcgacaaggcgggc
gcgaagcggctgatgcaggcggccggcgtgccctgcattcccggctaccagggtgaagac
cagagcgcggccacgctcgctgccgaagccgcgcgcatcggctggcccgtgatgatcaag
gcgaccgccggcggcggcgggcgcggcatgcggctcgcgccttcggccgatgcctttgcc
gaactgctgcagagcgcgcagtccgaggcgctccatgccttcggcgacgcgacggtgatc
ctggagcgcgccatcgccgcgccgcgccacatcgagatccaggtgttcgccgaccggcac
ggcaacgccatccaccttggcgagcgcgactgctcggtgcagcgccggcatcagaagctg
atcgaggaaacgccctcccccgccgtctccggggcattgcgcgagcgcatgggcgcgacg
gcggtggcggcggccgaggccatcggctacgaaggcgcgggcacgctcgaattcctgctc
gatgcgaagggagagtactggttcatggaaatgaacacccggctgcaggtggagcatccg
gtgaccgaagccgtgacgggactcgacctggtcgagctgcagctgcgcattgcggcgggc
gagccgctgcctcttgcacagcaggacgtgcgcatgagcggccatgccatcgaagtgcgg
ctgtgtgcagaagttccgcagcagggcttcgtgccgcaaagcggcacgctggccgcgtgg
cgcccctcggccgccctgcgcatcgaacacgcgctgcgagacggcgccgcggtgccgccc
ttctacgattcgatgatcgccaagctggtggcccacggccgcacgcgcgaagaagcgaga
cgccggctgatcgcggggctgcaggacacggtggcattgggccttgcgaccaaccagcgc
ttccttcagcgcgcgctgtcgcatccggcgtttgccggcggttcggccacgacggcgttc
attgccgaacacgccgaggcattgcttgcgcccgatcccgccatggagcgccgcgccgca
tggctggcggcgctgctgctgcagctgggcgaacgcggatggccctcgccgctcgcgcat
acgctgcccaacgccttgcgcttttcgctcgacggcatggtgcatgcggcgcgcgtgacg
ccgcagggtgcgggccgtttcgatgtcgccctcgatgcagcggcaccggcccggatcgaa
cttctttcgctggccggcgatggcgccttgtgcttctcgtgcgatggcgtctcggagcag
gccatggcggtgcgcgaatccgccgttcgccagtggatccatttccgcggccaggccttc
gaattccaggacctcacgcatgtcgcggtgccgcgcaccggcgccgcgggtggcgacggc
ctgctgcgcgcctcgatgaacggccgcgtcgtcgcgctgctcgtggcggaaggcgacgcc
gtcgccgccggccagccgatcgccacgctcgaggcgatgaagatggaacatgtgcactgt
gcaccgcgcgccggccgtgtcgccgcgttgcatgtgacggtgggcgcgcaggtggccgcg
cgccatgtggtggccgagattgccgacgcatga
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