Variovorax paradoxus B4: VAPA_1c15290
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Entry
VAPA_1c15290 CDS
T02835
Symbol
acnB
Name
(GenBank) aconitate hydratase 2 AcnB
KO
K01682
aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:
4.2.1.3
4.2.1.99
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00020
Citrate cycle (TCA cycle)
vpd00630
Glyoxylate and dicarboxylate metabolism
vpd00640
Propanoate metabolism
vpd01100
Metabolic pathways
vpd01110
Biosynthesis of secondary metabolites
vpd01120
Microbial metabolism in diverse environments
vpd01200
Carbon metabolism
vpd01210
2-Oxocarboxylic acid metabolism
vpd01230
Biosynthesis of amino acids
Module
vpd_M00009
Citrate cycle (TCA cycle, Krebs cycle)
vpd_M00010
Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
vpd_M00012
Glyoxylate cycle
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
VAPA_1c15290 (acnB)
00630 Glyoxylate and dicarboxylate metabolism
VAPA_1c15290 (acnB)
00640 Propanoate metabolism
VAPA_1c15290 (acnB)
Enzymes [BR:
vpd01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.3 aconitate hydratase
VAPA_1c15290 (acnB)
4.2.1.99 2-methylisocitrate dehydratase
VAPA_1c15290 (acnB)
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Gene cluster
GFIT
Motif
Pfam:
Aconitase_2_N
Aconitase_B_N
Aconitase
Ketoacyl-synt_C
Motif
Other DBs
NCBI-ProteinID:
AGU48641
UniProt:
T1X846
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All DBs
Position
1:1664195..1666783
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AA seq
862 aa
AA seq
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MLQAYVDHVAERAALGIPPLPLSAKQTAEAIELLKSANAKDGAFLLDLLTHRVPAGVDDA
AKVKASYLAAVAHGTEKNAFISRARATELLGTMLGGYNISPMIDLLDDAEVGRTAAEGLK
KTLLMFDQFHDVKEKADKGNANAKGVLQSWADAEWFTSRPEVPQSITVSIFKVAGEINTD
DLSPAPDATTRPDIPMHALAMHKNARPGIVPEEDGKRGPVKFIEDLRARGHLVAYAGDVV
GTGSSRKSATNSVLWFTGEDIPFVPNKRFGGVCLGGKIAPIFYNTMEDSGALPIELDVSQ
MNMGDVVELRPYEGKALKDGKVIAEFKVKSDVLFDEVRAGGRIPLIIGRGLTAKAREALG
LPASTLFRLPQSPVDTKKGFSLAQKMVGRACGLPEGQGVRPGTYCEPKMTSVGSQDTTGP
MTRDELKDLACLGFSADLVMQSFCHTAAYPKKVDVKMHHELPEFMANRGGVSLRPGDGVI
HSWLNRLLTPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGK
MQPGVTLRDLVNAIPLYAIKSGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELSDAS
AERSAAGCTVHLNKEPIIEYINSNITLMKWMIAEGYADARTLARRIAAQEAWLADPQLLK
GDADADYAAVIEIDLAEIHEPIVACPNDPDDVKTLSDVAGAAIDEVFIGSCMTNIGHFRA
ASKLLEGKRDIPVKLWIAPPTKMDAQQLTEEGHYGVFGNAGARTEMPGCSLCMGNQAQVR
EGATVMSTSTRNFPNRLGKNTNVYLGSAELAAICSRLGRIPTREEYMAATGVLDASSAQI
YQYLNFDKIDDYKTEAGAAVAA
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaagcctacgttgaccatgttgccgaacgcgccgcgctcggtattccgccgctg
ccattgagcgcgaagcaaaccgccgaggccatcgagctcctcaagagcgcgaatgccaag
gacggtgccttcctgctcgatctgctcacccatcgcgtgcccgccggcgtcgacgacgcg
gccaaggtcaaggcgagctacctggcggccgtggcccacggcaccgagaagaacgcgttc
atctcgcgcgcccgcgccaccgaactgctcggcaccatgctcggcggctacaacatcagc
ccgatgatcgacctgctcgacgacgccgaagtgggccgcacggcggccgaaggcctgaag
aaaaccctgctgatgttcgaccagttccacgacgtcaaggaaaaggccgacaagggcaac
gccaacgccaagggcgtgctgcagagctgggccgatgccgaatggttcaccagccgcccc
gaagtgccgcaaagcatcacggtcagcatcttcaaggtggccggcgaaatcaacaccgac
gacctgtcgcccgcacccgacgccaccacgcgtcccgacattccgatgcacgcgctcgcg
atgcacaagaacgcccgccccggcatcgtgcccgaagaagacggcaagcgcggcccggtg
aagttcatcgaagacctgcgcgcgcgcggccacctcgtggcctatgccggcgacgtggtc
ggcacgggctcgtcgcgcaagagcgccaccaactcggtgctgtggttcaccggcgaagac
attcccttcgtgcccaacaagcgcttcggcggcgtctgcctcggcggcaagatcgcgccg
atcttctacaacaccatggaagactcgggcgcgctgcccatcgagctcgacgtgagccag
atgaacatgggcgacgtggtcgaactgcgtccctacgaaggcaaggcgctgaaggacggc
aaggtcatcgcggaattcaaggtcaagagcgacgtgctgttcgacgaagtgcgcgccggc
ggccgcattccgctgatcatcggccgcggcctcacggccaaggcgcgcgaggcgctgggc
ctgccggcttcgacgctgttccgcctgccgcaaagcccggtcgacaccaagaagggcttc
tcgctcgcacagaagatggtcggccgcgcctgcggcctgcccgaaggccagggcgttcgc
ccgggcacctactgcgaacccaagatgacctcggtcggctcgcaggacaccaccggcccg
atgacgcgcgacgagctgaaggacctggcctgcctgggcttctcggccgacctcgtgatg
cagtcgttctgccacacggcggcgtacccgaagaaggtcgacgtcaagatgcaccacgaa
ctgcccgagttcatggccaaccgcggcggcgtttcgctgcgtccgggcgacggcgtgatc
cacagctggctcaaccgcctgctcacgcccgacaccgtcggcaccggcggcgacagccac
acccgcttcccgatcggcatcagcttccccgcgggctccggcctcgtggccttcgccgca
gccaccggcgtgatgccgctggacatgcccgagtcggtgctcgtgcgcttcaagggcaag
atgcagcccggcgtcacgctgcgcgacctggtcaacgcgattccgctgtatgccatcaag
agcggcctgctcacggtcgagaagaagggcaagaagaacatcttctcgggccgcatcctc
gagatcgagggcctgccggacctgaaggtggaacaggccttcgaactgagcgacgcgtcc
gcggagcgctcggccgccggctgcacggtgcacctgaacaaggaaccgatcatcgaatac
atcaacagcaacatcacgctgatgaagtggatgattgccgaaggctacgccgacgcccgc
acgctggcgcgccgcatcgccgcgcaggaagcctggctcgcggacccgcagctgctcaag
ggcgatgccgacgccgactacgccgcggtcatcgagatcgacctggccgagatccacgaa
cccatcgtggcctgcccgaacgacccggacgacgtgaagacgctcagcgacgtggctggc
gccgcgatcgacgaagtgttcatcggctcgtgcatgaccaacatcggccacttccgcgcc
gcgtcgaagctgctcgaaggcaagcgcgacatcccggtcaagctgtggattgcaccgccc
accaagatggatgcgcagcagctcacggaagaaggccactacggcgtgttcggcaatgcc
ggtgcgcgcaccgaaatgccgggctgctcgctgtgcatgggcaaccaggcgcaggtgcgc
gaaggcgccacggtgatgtcgaccagcacccgcaacttcccgaaccgcctgggcaagaac
accaacgtgtacctgggttcggccgagctggccgcgatctgctcgcgcctgggccgcatc
ccgacgcgcgaggagtacatggccgcgacgggcgtgctcgacgcgtcgagcgcgcagatc
taccagtacctgaacttcgacaagatcgacgactacaagaccgaggccggcgccgcagtc
gcggcctga
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