Variovorax paradoxus B4: VAPA_1c25700
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Entry
VAPA_1c25700 CDS
T02835
Symbol
mnmC
Name
(GenBank) tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC
KO
K15461
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:
2.1.1.61
1.5.-.-]
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpd03016
]
VAPA_1c25700 (mnmC)
Enzymes [BR:
vpd01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.61 tRNA 5-(aminomethyl)-2-thiouridylate-methyltransferase
VAPA_1c25700 (mnmC)
Transfer RNA biogenesis [BR:
vpd03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
VAPA_1c25700 (mnmC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAO
Methyltransf_30
NAD_binding_8
Pyr_redox_2
Pyr_redox
3HCDH_N
FAD_binding_3
FAD_binding_2
HI0933_like
AlaDh_PNT_C
GIDA
UDPG_MGDP_dh_N
NAD_binding_9
Lycopene_cycl
MurD-like_N
XdhC_C
ApbA
DUF348
Sacchrp_dh_NADP
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
AGU49668
UniProt:
T1XAV4
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All DBs
Position
1:complement(2725384..2727231)
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AA seq
615 aa
AA seq
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MTAEPVAWRADGVPHSERFDDIYHTETGALAQSRHVFLGGCGLPGAWSGRPQWRILETGF
GLGLNFLTSWQAWRADANRPRMLHFVSVEAHPVGPGDLLRAAEAYPELMPLARELAAQWH
GLLPGFHRLAFDAGRVLLTLCIGDVQPMLRAQRFEADSIFLDGFSPQQNPAMWSPDTLKA
VSRFARQGTGLATWTYARAVRDALAQNGFQLERRPGLPPKRDCLGGVFAPAWTVRRRGPA
PERIDTPGRCAVIGAGLAGAAVAASLARRGWQVTVLDAADRFAAGASGLPFGLMAPHVSP
DDALLSRLTRAGIRATWHELERLLEEGRDWRASGVLERRPEGDTRVPDGWSDGGPNESWP
ASAAQLAQARLPADAPALWHARAGWVRPQRLITAWLRGPGIEFRGNAPVARTVHGDGAWQ
LFDAADRLLAEAERVVVAAGFESGRFAPGLPLQPVRGQVMWGAMAADPGLPATPVNGDGH
LIAHVPADDGTQLWLAGATFDRDSTDLEPSDADAAANRERLERLLPAAAAALAASFDRGQ
VNAWVGVRCASGDRRPLVGPLDADAAGLWACTALGSRGLSFAALCAELLAAQWHGEPLPL
PANLAKALATQRTQA
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgctgagccggtggcctggcgcgccgacggcgtgccgcacagcgaacgcttcgac
gacatctatcacaccgaaaccggggcgctggcgcagtcgcgccatgtgttcctgggcggc
tgcggcctgcctggggcctggtccggacggccgcaatggcggattctcgaaaccggattc
gggctggggctcaatttcctgacaagctggcaggcgtggcgtgcggacgcgaaccggccg
cgaatgctgcacttcgtctcggtggaggcgcacccggtcgggcctggcgacctgctgcgc
gccgccgaagcctaccccgagctgatgccgctggcccgggaactggccgcgcagtggcac
gggctgctgccgggctttcaccgtctggccttcgacgccggccgcgtgctgctcaccctg
tgcatcggcgacgtgcagccgatgctgcgcgcgcagcgcttcgaggccgacagcatcttt
ctcgacggcttcagcccgcagcagaaccccgccatgtggtcgcccgacacgctgaaggcc
gtgtcgcgctttgcgcgccaaggcaccggccttgccacctggacctatgcccgtgcggtg
cgcgatgcgctcgcgcagaacggcttccagctcgaaaggcgcccaggcctgccgcccaag
cgcgactgcctgggcggggtgttcgcgccggcctggacggttcgccgccgcggccccgcg
cccgagcggatcgacaccccgggccgctgcgccgtgatcggcgccgggctggccggtgcg
gcggtggccgccagcctggcgcgccgcggatggcaggtcacggtgctcgatgcggccgac
cgcttcgccgccggtgcttccggcctgcccttcggcctgatggcgccgcatgtctcgccc
gacgacgccctgctctcgcggctcacgcgcgccggcatccgcgcgacgtggcatgaactg
gaacgcctgctggaagaaggccgcgactggcgcgccagcggcgtgctggagcgccggccc
gagggcgacacacgcgtccccgacgggtggagcgatggcggccccaacgagtcgtggccc
gcaagcgccgcgcaattggcgcaggcccgcttgccggccgatgcgccggccctctggcac
gcgcgcgcgggctgggtccggccgcagcggctgatcacggcctggctgcgcgggccgggc
atcgagttccgcggcaacgcaccggtggcacgcacggtgcacggcgacggcgcatggcag
ctgttcgatgcggcggaccggctgctggccgaggcggagcgcgtggtggtcgccgcgggc
ttcgaatccggccgcttcgctccggggcttccgctgcagcccgtgcgcggccaggtcatg
tggggcgccatggcggccgatcccgggcttcccgcgacacccgtcaatggcgacggccac
ctgatcgcgcatgtacccgccgacgacggcacccaactctggctggccggcgccaccttc
gaccgcgacagcaccgacctggagccgagcgatgccgatgccgccgccaaccgcgagcgc
ctggagcgtctgcttcccgccgccgccgccgcactggccgcgagcttcgatcgcggccag
gtcaacgcctgggtcggcgtgcgctgcgcatcgggcgatcgccggccgctggtcggcccg
ctcgatgccgatgcggccggcctctgggcctgcaccgcgctgggctcgcgcggtctcagc
ttcgcggccctgtgcgcggaactgctggccgcgcaatggcacggcgagccgctgccgttg
ccggccaacctggccaaggcgcttgccactcagcgaacgcaagcgtag
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