Variovorax paradoxus B4: VAPA_1c28450
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Entry
VAPA_1c28450 CDS
T02835
Symbol
dapE
Name
(GenBank) succinyl-diaminopimelate desuccinylase DapE
KO
K01439
succinyl-diaminopimelate desuccinylase [EC:
3.5.1.18
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00300
Lysine biosynthesis
vpd01100
Metabolic pathways
vpd01120
Microbial metabolism in diverse environments
vpd01230
Biosynthesis of amino acids
Module
vpd_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
VAPA_1c28450 (dapE)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
vpd01002
]
VAPA_1c28450 (dapE)
Enzymes [BR:
vpd01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.18 succinyl-diaminopimelate desuccinylase
VAPA_1c28450 (dapE)
Peptidases and inhibitors [BR:
vpd01002
]
Metallo peptidases
Family M20
VAPA_1c28450 (dapE)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M20
M20_dimer
Peptidase_M28
Motif
Other DBs
NCBI-ProteinID:
AGU49941
UniProt:
T1XBS5
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All DBs
Position
1:3011371..3012546
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AA seq
391 aa
AA seq
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MSRTLQLAEQLISRPSVTPDDAGCQQILGERLAQLGFTLETIESGPADFRVINLWAVRRP
ASATATKTLVFAGHTDVVPTGPVEQWTSHPFTPTHRNGKLYGRGACDMKTSIAAFVVSIE
EFLKATPDPQLTLALLLTSDEEGPGVDGTVIVCNALAARGETIDYCIVGEPTAVQRCGDM
IKNGRRGTMSGKLTVNGVQGHIAYPHLAKNPVHAVAPALAELVAINAAGGWDAGNAYFQP
TSWQISNFHSGTGASNVIPGSAVIDFNFRFSTESTPESLQKRVHAVLDAHGVDYSLGWTI
GGLPFLTTPGELVTAVQAAIADETGIATELSTSGGTSDARFIAKICKQVVELGPVNASIH
KIDEHIDVAEIETLKNIYKRTLERLEASLAE
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgaacgctccagctcgccgaacaactcatctcgcgcccctcggtcacccccgac
gatgcgggctgccaacagatcctcggcgaacggctggcgcaactgggcttcacactcgag
accatcgagagcgggccggccgacttccgcgtgatcaacctgtgggcggtacgccgcccg
gccagtgccacggcaacgaagacgctggtgttcgccggccacaccgacgtggtgcccacg
ggaccggtcgaacagtggaccagccacccgttcacgccaacgcaccgcaacggcaagctg
tacggccgcggcgcgtgcgacatgaagacatcgatcgcggccttcgttgtctccatcgag
gaattcctgaaggccacgcccgatccgcaactcacgctcgcgctgctgctcaccagcgac
gaagaaggcccgggcgtcgatggcacggtcatcgtctgcaacgcgctggccgcgcgcggc
gagaccatcgactattgcatcgtcggcgagcccactgccgtccagcgctgcggcgacatg
atcaagaacggccgccgcggcaccatgagcggcaagctcaccgtcaatggcgtgcagggc
cacatcgcctacccgcacctcgcgaagaacccggtgcacgccgtggcgcccgcactggcg
gagctggtggccatcaacgccgcgggcggctgggatgcaggcaatgcgtacttccagccc
accagctggcagatcagcaacttccattcgggcactggcgcgagcaacgtgattccgggc
agcgcggtcatcgacttcaacttccgcttctcgaccgaatcgacgcccgagtcgctgcaa
aagcgcgtgcatgcggtgctcgacgcgcatggtgtcgactactcgctgggctggaccatc
ggcggcctgccctttctcacgacgccgggcgaactcgttaccgccgtgcaagccgcaatc
gccgacgaaaccggcattgccaccgagctgtcgaccagcggcggcaccagcgacgcgcgc
ttcatcgccaagatctgcaagcaggtggtcgagctcgggccggtcaacgccagcatccac
aagatcgacgaacacatcgacgtggccgagatcgagacgctgaagaacatctacaagcgc
acgctggagcgcctcgaagcgtcgcttgctgaatga
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