Variovorax paradoxus B4: VAPA_1c29630
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Entry
VAPA_1c29630 CDS
T02835
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpd03009
]
VAPA_1c29630 (rimO)
Enzymes [BR:
vpd01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
VAPA_1c29630 (rimO)
Ribosome biogenesis [BR:
vpd03009
]
Prokaryotic type
ribosomal protein modification factors
VAPA_1c29630 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
CLP1_P
YajR_YAM
Methyltransf_2
Motif
Other DBs
NCBI-ProteinID:
AGU50057
UniProt:
T1XAV3
LinkDB
All DBs
Position
1:complement(3126894..3128300)
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AA seq
468 aa
AA seq
DB search
MSEVASPERMATPAAPKVGFVSLGCPKALTDSELILTQLSAEGYQTAKTFEGADLVIVNT
CGFIDDAVKESLDTIGEALAENGRVIVTGCLGAKTGDQGGNLVRQMHPSVLAVTGPHATQ
EVMDAVHANLPKPHDPFVDLVPNTFGIAGLKLTPRHYAYLKISEGCNHRCTFCIIPSMRG
DLVSRPVGDVLGEAKALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPVKTRMLELVR
TLGEIAEPYGAWVRLHYVYPYPSVDEIIPLMASGQVLPYLDVPLQHSHPDVLKRMKRPAS
GEKNLERLARWREVCPELVIRSTFIAGFPGETEQEFEHLLDFIREAQIDRAGCFAYSPVA
GATANDIPGMLPPAEREARRARFMEVAEAVSIAKLRQRVGATMQVLVDSAPSMGRKGGVG
RTYADAPEIDGTVRLLPPEKISKTLKVGEFTRARIVGAEGHDLIALPI
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagttgcctcccccgaacgcatggccacgccggctgcccccaaggtcggcttt
gtgagcctgggctgtcccaaggccctgaccgattccgaattgatcctgacccagctgagc
gcggagggctaccagacggccaagaccttcgagggtgccgacctggtgatcgtcaacacc
tgcggcttcatcgacgatgccgtgaaggaaagcctcgacaccatcggcgaagcgctggcg
gaaaacggccgcgtgatcgtcacgggctgcctgggcgccaagaccggcgaccagggcggc
aacctggtgcggcagatgcaccccagcgtgctggccgtgaccggtccgcacgccacgcag
gaagtcatggatgcggtccacgccaacctgcccaagccgcacgatccgttcgtcgacctg
gtccccaacaccttcggcatcgcaggcctcaagctcacgccgcggcactatgcctacctg
aagatcagcgaaggctgcaatcaccgctgcaccttctgcatcattccttcgatgcgcggc
gacctggtgtcgcgcccggtcggcgacgtgctcggcgaggccaaggcccttttcgaaggc
ggcgtgaaagaactgttggtgatcagccaggacacctctgcctatggcgtggacgtcaag
taccgcaccggcttctgggacggcaagccggtcaagacgcgcatgctcgaactggtgcgc
acgctgggcgaaattgccgagccctacggcgcctgggtccggctgcactatgtgtatcca
tatccgagcgtggacgagatcattcccctgatggcaagcggccaggtgctgccttacctc
gacgtgccgctgcagcacagccatcccgatgtgctcaagcgaatgaagaggccggccagc
ggcgagaagaatctggagcgcctggcgcggtggcgcgaggtctgccccgaactggtgatc
cgcagcaccttcatcgcaggcttccctggcgaaaccgagcaggagttcgagcatctgctc
gacttcatccgcgaggcgcagatcgaccgggccggttgctttgcctacagccccgtagcg
ggcgccaccgccaacgacatccccggcatgttgccgccagcggaacgcgaagcgcgccgt
gcccgtttcatggaagtggcggaagcggtgtcgatcgcgaagctgcgccagcgtgtcggt
gcgaccatgcaggtgctggtggattcggcgcccagcatgggccgaaagggcggcgtaggc
cgcacctatgccgacgcacccgaaatcgacggcaccgtgcgcctgctgccgcccgagaag
atcagcaagacgctcaaggtgggtgaattcactcgggcccgcatcgtgggtgccgagggc
cacgacctgatcgcgctgccgatttga
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