Variovorax paradoxus B4: VAPA_1c34260
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Entry
VAPA_1c34260 CDS
T02835
Symbol
pcaB
Name
(GenBank) 3-carboxy-cis,cis-muconate cycloisomerase PcaB
KO
K01857
3-carboxy-cis,cis-muconate cycloisomerase [EC:
5.5.1.2
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00362
Benzoate degradation
vpd01100
Metabolic pathways
vpd01120
Microbial metabolism in diverse environments
vpd01220
Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
VAPA_1c34260 (pcaB)
Enzymes [BR:
vpd01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.2 3-carboxy-cis,cis-muconate cycloisomerase
VAPA_1c34260 (pcaB)
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Motif
Pfam:
Lyase_1
Motif
Other DBs
NCBI-ProteinID:
AGU50512
UniProt:
T1XC52
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All DBs
Position
1:complement(3621475..3622686)
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AA seq
403 aa
AA seq
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MSIFEGFLSTSETLSAFSDHNFVDAMLRFEAALTRAQVALGLVPESAAHSIVGSCKVELF
DVAKIVRDSGRAGSVAIPLVKALKEAVGLFNPGAVPFVHFGSTSQDVIDTAMALVTREGV
ALIEADVDRAIEALLQHATQHAATPILARTLMQPASVTSFGLKCAGWAAPLVRSRARLRE
AARHALNVQLGGAVGTLAQMKGQGPAVVQRVADELGLGNAGATWHTQRDEWVALGCELGL
LTGSLGKIARDISLMGQYEVGEVAEPTEPGRGGSSAMPHKRNPVAAMVALAAAQRAPQRV
AALLAAMPQEHERALGGWQAELAEWPQLLMSAHGSARALAGALPGLQIDAARMRANIDAL
RSELPREAADEWFDPALAGPAGETALRQVAALRAHLTAKDTSR
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgagtattttcgaaggctttctttccacgtccgagacgctctccgccttcagcgaccac
aacttcgtcgatgccatgcttcgcttcgaagcggcattgacccgtgcgcaggtcgcgctc
gggctggtgccggaatcggccgcgcattcgatcgtcggcagctgcaaggtcgagctgttc
gacgtggcgaagatcgtgcgcgacagcggccgcgccggcagtgtcgcgattccactggtc
aaggccttgaaggaggccgtgggcctgttcaatcccggggccgtgcctttcgtgcatttc
ggcagcaccagccaggacgtgatcgacaccgccatggcgctggtcacgcgcgaaggcgtc
gcgctgatcgaagccgatgtcgaccgcgccatcgaagcgctgctgcagcacgccacacag
catgcggccacgccgattcttgcgcgcacgctgatgcagccggcgtcggtcacgagcttc
ggcctcaagtgcgccggctgggccgcgccgctggtgcgcagccgcgcccggctgcgggag
gccgcgcggcatgccctgaacgtgcagctcggcggggccgtcggcacgcttgcgcagatg
aaggggcaggggccggccgtcgtgcagcgcgtggcggacgagctcggcctcggcaatgcc
ggtgccacctggcatacgcagcgcgacgaatgggtcgcgctcggctgcgagctgggactg
ctcacgggcagcctgggcaagatcgcgcgcgacatttcgctcatgggccagtacgaggtc
ggcgaggtggccgaacccaccgagccgggccgcggcggctcctcggcgatgccgcacaag
cgcaaccccgtggcggcgatggttgcgctggccgcggcccagcgtgcgccccagcgcgtt
gccgcgctgctggccgcgatgccgcaggaacacgagcgcgcactcggcggctggcaggcc
gagctggccgaatggccgcagctgctcatgtccgcgcacggcagcgcgcgcgcgctggcc
ggcgcgctgccgggcctgcagattgacgcggcgcgcatgcgtgccaacatcgacgcattg
cgctcggagctgccgcgcgaggccgcggacgaatggttcgaccccgccctggccgggccc
gccggcgaaaccgcgctgcgccaagtggcggccttgcgcgcccacctgactgcgaaagac
acatcccgatga
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