Variovorax paradoxus B4: VAPA_2c02990
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Entry
VAPA_2c02990 CDS
T02835
Symbol
pcaB1
Name
(GenBank) 3-carboxy-cis,cis-muconate cycloisomerase PcaB
KO
K01857
3-carboxy-cis,cis-muconate cycloisomerase [EC:
5.5.1.2
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00362
Benzoate degradation
vpd01100
Metabolic pathways
vpd01120
Microbial metabolism in diverse environments
vpd01220
Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
VAPA_2c02990 (pcaB1)
Enzymes [BR:
vpd01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.2 3-carboxy-cis,cis-muconate cycloisomerase
VAPA_2c02990 (pcaB1)
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GFIT
Motif
Pfam:
Lyase_1
ADSL_C
Motif
Other DBs
NCBI-ProteinID:
AGU52860
UniProt:
T1XL43
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All DBs
Position
2:304339..305715
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AA seq
458 aa
AA seq
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MPIPSLPMASTVVDSILFRDAFGTRKMREIFSDSTLIRRYIDAEIALAKAEARCGVIPQE
AAEAIARESKIERIDFDHMREETDIVGYPILPLVHQLVEMCGEAGRFVHWGATTQDIMDT
AVALQVRDALDSVEADIRELRGILAALAKKHRDTPMAGRTHLQQALPVTFGYKAAIWLAM
FDRHQQRLAELRPRVAVVEFAGAAGTLASLGDKGFEVQKAMAEELGLGVPATTWHVARDG
FAEAVNLLALVTGSLGKIALDIMIMASTEFAEVYEPFVKGRGASSTMPQKRNPISSELML
AASKAVRQHAGLMVDAMVQDFERATGPWHAEWIAIPESFILTSGALHQAKFALGGLIVDE
ARMAHNLGISRGLIVAEAVMMGMAPHIGRQQAHDVVYDACRTVNEKGGTLAEALAALPEV
TRHLDRTTIDRLTDPANYLGLAPQMVDRALALSAEVGA
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgccgattccttcgctccccatggccagcaccgttgttgattccatcctgttccgcgat
gcattcggcacccggaagatgcgcgagattttctcagacagcacgctgatccggcgctac
atcgatgcggagatcgccctggccaaggccgaggcccgctgcggcgtcattccgcaagag
gctgccgaagcgattgcgcgcgagtccaagatcgagcgtatcgacttcgaccacatgcgg
gaagagacggacatcgtcggctatcccatcctgccgctggtgcatcagctggtcgagatg
tgcggagaagcaggccgcttcgtgcactggggcgcgacgacgcaggacatcatggacacc
gccgtcgccctgcaggtgcgcgacgcgctcgacagcgtcgaagccgacatccgcgagttg
cgcggcatcctggccgcgctggccaaaaagcaccgcgatacgccgatggccggccgcacc
catctgcagcaggcactgccggtgaccttcggctacaaggctgcgatctggctggcgatg
ttcgaccggcaccagcagcgccttgccgagctgcgcccgcgcgtggcggtggtcgagttc
gccggcgccgccggcacgctggcttctctgggtgacaagggcttcgaagtccagaaggcg
atggccgaggaactggggctcggcgtgcccgccaccacctggcatgtggcgcgcgatggt
tttgcggaagcagtgaacctgctggcgctcgtgaccggctcgctcggcaagatcgcgctc
gacatcatgatcatggcgtcgacggagttcgccgaggtctacgagcccttcgtgaaggga
cgcggtgcatcgagcacgatgccgcaaaagcgcaacccgatctccagcgagttgatgctc
gcggcatcgaaggcggtgcggcagcacgcaggcctgatggtcgatgcgatggtgcaggac
ttcgaacgtgccaccggcccctggcatgccgagtggatcgccattcccgaaagcttcatc
ctgacctcgggcgccttgcaccaggcgaagttcgcgctcggcggactgatcgtcgatgaa
gcccgcatggcccacaacctgggcatcagccggggactgatcgtggccgaggccgtgatg
atgggcatggccccgcacatcggccgccagcaggcgcacgacgtggtctatgacgcctgc
cgcaccgtgaacgagaagggcggcaccctggccgaggcgctggcagcactgccggaggtc
acccggcatctcgaccgcaccaccatcgatcggctcaccgatcccgccaactacctcggc
ctcgcgccgcagatggtggaccgcgcgctggcgctgtcggccgaagtcggtgcctga
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