Variovorax paradoxus B4: VAPA_2c05840
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Entry
VAPA_2c05840 CDS
T02835
Symbol
pcaB2
Name
(GenBank) 3-carboxy-cis,cis-muconate cycloisomerase PcaB
KO
K01857
3-carboxy-cis,cis-muconate cycloisomerase [EC:
5.5.1.2
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00362
Benzoate degradation
vpd01100
Metabolic pathways
vpd01120
Microbial metabolism in diverse environments
vpd01220
Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
VAPA_2c05840 (pcaB2)
Enzymes [BR:
vpd01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.2 3-carboxy-cis,cis-muconate cycloisomerase
VAPA_2c05840 (pcaB2)
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GFIT
Motif
Pfam:
Lyase_1
ADSL_C
HTH_5
Motif
Other DBs
NCBI-ProteinID:
AGU53143
UniProt:
T1XKN5
LinkDB
All DBs
Position
2:complement(597918..599264)
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AA seq
448 aa
AA seq
DB search
MASTIIDSRIFGDMFSDARMRDVWSDENRTAKYLDIERALAKVQGELGIIPKEAADEIVR
NCELSQIDWAKLKAKTEQIGYPIIAVVNQINANCRDKLGEYCHWGATTQDITDTAAVLQM
REGLALVEQDLNEIGDALAALAKKYRDTPVIGRSNLQQATPITFGYKMASILAGIDRHRE
RLQQLKPRVLMGEFGGASGTLSSLEKGAMETQAGLMKELGLSQPLISWHTVRDTIAEVGA
FLGLVGGSLGKIAMDVKLMMQTEVAEVFEPFAPGRGSSSTMPQKRNPISCLYIHANISVA
RQHAAALMDAMVADHERSTGPWEIEWVSLPEIFCLMSGALKQTKFILKGLEVDATRMRAN
IDITNGLVMSEAVMMGLGPYIGREYAHDLVYDLCRQALADSRPLIEILATHPEINKHVTR
AQLDAMCDPANNLGQAGVMIDRVLGARR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggcctctaccatcatcgactcgcgcatcttcggcgacatgttcagcgacgcgcgcatg
cgcgacgtctggtccgacgagaaccgcaccgccaagtatctggacatcgagcgcgccctc
gccaaagtgcagggcgagctcggcatcatcccgaaggaagcggcggacgagatcgtccgc
aactgcgagctctcccagatcgactgggcaaagctcaaggccaagaccgagcagatcggc
tatccgatcattgcggtcgtcaaccagatcaacgccaactgccgcgacaagctcggcgag
tattgccactggggcgccaccacgcaggacatcaccgacacggccgcggtgctccagatg
cgcgaaggtctcgcgctggtcgagcaggacctcaacgagatcggcgatgcgctggctgcc
ctggcgaagaagtaccgcgacacgccggtcatcggtcgctccaacctgcagcaggccacg
ccgatcaccttcggctacaagatggcgagcatcctggcggggatcgatcgccaccgtgag
cgcctgcagcagctcaagccgcgcgtcctcatgggcgagttcggcggcgcgtccggcacc
ttgtcctcgctggagaagggcgcgatggaaacccaggccggcctgatgaaggagctgggc
ctgtcacagcccctgatctcgtggcacactgtgcgcgacaccatcgcggaagtcggcgcc
ttcctcggcctggtgggcggctcgctcggcaagatcgcgatggatgtcaagctcatgatg
cagaccgaagtggcggaggtcttcgagccgttcgcgccgggccgcggttcgtcgtcgacc
atgccgcaaaagcgcaatcccatctcctgcctctacatccacgccaacatctcggtggcg
cgccagcatgcggcggccctgatggatgcgatggtggccgaccacgagcgctcgaccgga
ccctgggagatcgagtgggtctcgctgccagagatcttctgcctgatgtcaggtgcgctc
aagcagaccaagttcatcctgaagggcctggaggtcgacgcgacccgcatgcgcgccaac
atcgacatcacgaacggccttgtgatgtcggaggcagtgatgatgggcctcgggccgtac
atcggccgcgaatatgcgcacgacctggtctatgacctgtgccgccaggcactggccgac
agccggccgctgatcgagatcctggccacccatccggagatcaacaagcacgtcacgcga
gcccaactcgacgcaatgtgcgacccggccaacaacctcggccaagccggcgtcatgatc
gatcgcgtgctcggcgcgcgccgctga
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