Vibrio pelagius: LZI70_06020
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Entry
LZI70_06020 CDS
T08558
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
vpg
Vibrio pelagius
Pathway
vpg00540
Lipopolysaccharide biosynthesis
vpg01100
Metabolic pathways
vpg01250
Biosynthesis of nucleotide sugars
Module
vpg_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
vpg00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
LZI70_06020 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
vpg01005
]
LZI70_06020 (rfaD)
Enzymes [BR:
vpg01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
LZI70_06020 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
vpg01005
]
Core region
LZI70_06020 (rfaD)
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
ThiF
NAD_binding_4
NAD_binding_10
Phage_T7_Capsid
adh_short
KR
TrkA_N
NmrA
Motif
Other DBs
NCBI-ProteinID:
UTT85798
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All DBs
Position
1:1398166..1399107
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AA seq
313 aa
AA seq
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MIIVTGGAGMIGSNIVKALNEAGHNDILVVDNLKNGKKFKNLVDLDITDYMDRDDFLTQV
MAGDDFGHIEAIFHQGACSATTEWDGKYMMLNNYEYSKELLHYCVEREIPFLYASSAATY
GETDTFIEEKEYEGALNVYGYSKQQFDNYVRRLQEDAAAHNEKLSQITGFRYFNVYGPRE
EHKGSMASVAFHLNNQMNAGENPKLFAGSETFKRDFVYVGDVAAVNLWFLENGVSGIFNL
GTGNAESFEEVAKAVIKHHGKGEIETIPFPEHLKGAYQEFTQADLTKLRATGCDIQFKTV
AEGVAEYMALKNK
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgattatcgtaacgggtggcgctggcatgattggcagcaatattgttaaggcacttaat
gaagcaggccacaacgatatcctagtcgtcgacaacctaaagaatggtaagaagttcaaa
aaccttgtcgacctagacatcactgattacatggatcgtgacgacttcctaactcaagtt
atggctggcgatgatttcggccatatcgaagcgattttccaccaaggcgcatgctctgcg
acaaccgagtgggatggtaagtacatgatgcttaacaactacgagtactcaaaagagcta
ctgcattactgtgttgagcgtgagattcctttcctatacgcctcatctgccgccacttac
ggcgagacagatacgtttattgaagaaaaagagtacgaaggtgcgctaaacgtatacggc
tactctaagcagcagttcgataactatgttcgtcgcttgcaagaagacgccgcagcgcat
aacgaaaaactatcgcaaatcaccggcttccgttacttcaacgtttacggcccacgtgaa
gagcacaaaggcagcatggcatcggttgctttccatctaaacaaccagatgaacgcgggt
gaaaatccaaagctattcgcgggtagcgaaacattcaaacgtgattttgtgtacgtgggt
gacgtagcagcagtgaacctttggttcctagaaaatggcgtgtcaggtattttcaaccta
ggtactggtaatgctgaatcttttgaagaggttgccaaagccgtcatcaagcaccacggt
aaaggtgaaattgagaccattccattcccagagcacctgaaaggcgcttaccaagagttt
actcaggcagacttaacgaagctgcgcgcaacgggttgtgatattcaattcaaaaccgtt
gccgaaggcgttgctgagtacatggcactgaagaacaaataa
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