Vibrio parahaemolyticus UCM-V493: VPUCM_3063
Help
Entry
VPUCM_3063 CDS
T03116
Name
(GenBank) Sensory box/GGDEF family protein
KO
K20964
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vph
Vibrio parahaemolyticus UCM-V493
Pathway
vph05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vph00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VPUCM_3063
Enzymes [BR:
vph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
VPUCM_3063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
FIST
FIST_C
GGDEF
HIND
NCF1_PBR_AIR
Motif
Other DBs
NCBI-ProteinID:
AHJ01022
LinkDB
All DBs
Position
1:complement(3337562..3340048)
Genome browser
AA seq
828 aa
AA seq
DB search
MRAFSKRVHDVSQLNDFLVTSQLHPDKQYLVQILSTQSRECAAALAKAVLSMLPNAHVIG
HSTRNVILDGDIFTSGCLINLIEFDQTTLTSAVQAYSFSPDIDGGELKRSLQLQSNSQVI
ISFAVQIERRDYPLYQTFATENVRVSGGLAQTIEDGCWVLYQNQTYDNAVVAVALHSDTL
KTWTDAYSEWNPIGMPHKVTHAKGTRLYCLGERKALDVYKHYLADGHDVTINQLLSFPLY
RETLGRKEVCTVTELHADGSMSFDRPWCLGDEVQFCYNHPSLTLEQVRHGVVELAMHQPE
VVMIYNCASRLDFIDSSDEVQAFMDIAATFGSYCMGEIHGDIGQPEILHHSLTYLAMREG
DEVQSLNLPKPQVSASISPLFSLIRNAIGDLNHMNAHMGYQLDRQTRKLQESYRRDSRTG
LQNRVALQERLSHIDCDEHLLTLKLLNFSHINEKYGYRVGDQLLKDLSMHFTNRLRKRLG
MPAALQLYSIGVGEWAFVFKAEQSSETIKQHFTRFADAVEQTNFEPLGLREIDYLSISLC
GGLVSRRDFPSASPDELLLKGIEARRSGVRSNTHICNAKDIEVSEDVRKEQLGWLSCVSR
AILKQNIITYSQPIVHAYSHLPASQECLVRILEEDGTVIAPGRFLPIISDTHLYTRLSRH
MIRSTLHYMRDKKGDFSINLSPQDLLSDKTLMLLEHEISQLNDSTRIGLEVLESEQIKDY
GRMIEVCSHFRKLGARIIVDDFGSGYSNIDEILKLEPEVIKLDGSLIRDIDKDLKQRKIA
SQLVRLCQVFNAETVAEFVHNREVCKIAQDMGVDYLQGYYLGEPTRLF
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgcgagctttttccaaacgggtccacgatgtaagtcagcttaatgactttttagtcact
tctcagttgcacccagataaacagtatttggtgcaaattttgtctacgcaatcgcgagaa
tgtgcggctgcactcgccaaagcggttttgtcgatgttgcccaatgctcatgtcatcggt
cacagtactcgcaatgtaattttggatggcgacatttttacctctggctgcctcatcaac
ctgattgagtttgaccaaaccacgctaacgtctgccgtccaagcgtattctttctctccc
gatatagacggtggcgagctcaaacgttcgctgcagttacaaagcaactctcaagtcatc
atcagttttgcagtgcaaatcgaacgtcgtgattatcctttgtatcaaacttttgcgacc
gaaaacgtgcgagtgtctggtggattagcgcagaccatagaagacggctgttgggtgctc
tatcaaaaccagacatacgacaacgccgtagtggcagtggctttgcacagtgatactttg
aaaacttggacagacgcgtattccgagtggaacccaatcggcatgccgcacaaagtgacg
catgcgaaaggcacgcgcttgtattgcttaggagagcgtaaagccctcgatgtttacaag
cattatcttgccgacgggcacgacgtgacgattaaccaattactcagtttcccgttgtat
cgagaaacgttggggcgcaaggaagtttgtaccgtcacagaacttcacgctgatggaagc
atgagtttcgataggccgtggtgcctcggtgatgaggttcagttttgctataaccatcct
tctctgacgttagaacaagtgcgtcatggggtggtggaacttgctatgcatcagccagaa
gtagtgatgatttacaactgtgcctcacggctggattttattgatagcagcgatgaagtg
caggcgtttatggatattgccgcgacctttggcagctactgcatgggtgaaatacatggt
gacattggccagccagaaattcttcaccacagtttgacgtaccttgcgatgcgcgaaggc
gatgaggtgcaatcgctgaatttgcctaaaccgcaagtgagcgcttcgatttcaccgctg
tttagcttaatacgcaatgcgattggcgatttgaatcatatgaacgctcacatgggttat
caacttgatcgtcaaactcgcaagttacaagaaagctaccgtcgtgacagtcgcacgggg
ctgcaaaatcgcgtggcgctgcaagagcgcttaagtcacatcgattgtgacgagcatttg
ttaacgcttaagctactcaatttcagccacatcaacgaaaagtacgggtatcgagtcgga
gaccagctgctcaaagatctgtcgatgcattttaccaatcgattgagaaagcgcttaggc
atgccagcggcgctgcaactgtacagcatcggtgtaggtgagtgggcttttgtgtttaag
gctgaacaaagtagcgagacgataaaacagcactttactcgttttgctgatgcggttgag
caaactaactttgagccgctcggcctgcgcgaaattgattacctgtctatttccttgtgt
ggtggcttggttagccgtcgtgattttccatcggcttctcctgatgagctcttattaaaa
ggcatagaagcgcgtcgttctggcgttcgcagcaacacgcatatttgcaacgctaaagac
atcgaagtcagtgaagatgtacgtaaagagcaactagggtggttgagttgtgtcagccgc
gcgattctcaagcagaacatcattacgtatagccaaccgattgtgcacgcttacagtcat
cttcctgccagccaagaatgtctggtgcggattttagaagaagacggaacagtgattgct
ccagggcgatttttaccgatcatctcagacacgcatttgtacaccagattgagtcgtcac
atgatccgctcgacgctgcattacatgcgagataagaaaggggatttctcgattaacttg
tctccgcaagatttgttgagcgacaaaacgttgatgttgctggagcatgaaatcagccag
ttgaatgactcgacgcggatagggctggaagtactggagtctgaacagattaaagattac
ggtcgtatgatagaagtgtgcagccatttcagaaaactgggtgcacgcattatcgtggac
gattttggttctggatactccaatattgatgagatcttaaagctagagccggaagtgata
aagctggatggcagcttgattcgagacatcgataaggatttaaagcagcgaaaaatagct
tctcagttggtgcgtttgtgccaggtgtttaatgcagaaacggtcgcggagtttgtgcac
aatcgagaggtgtgcaaaatcgcgcaggatatgggcgtcgattatctgcaaggctactac
ttaggtgaacctacgcgtctgttttag
DBGET
integrated database retrieval system
