Vigna radiata (mung bean): 106777530
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Entry
106777530 CDS
T04126
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
vra
Vigna radiata (mung bean)
Pathway
vra03020
RNA polymerase
vra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106777530
09124 Replication and repair
03420 Nucleotide excision repair
106777530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vra03021
]
106777530
03400 DNA repair and recombination proteins [BR:
vra03400
]
106777530
Enzymes [BR:
vra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106777530
Transcription machinery [BR:
vra03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106777530
DNA repair and recombination proteins [BR:
vra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106777530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MIF4G_like_2
DUF5938
Motif
Other DBs
NCBI-GeneID:
106777530
NCBI-ProteinID:
XP_014520599
UniProt:
A0A1S3VRA4
LinkDB
All DBs
Position
11:6763293..6773056
Genome browser
AA seq
1841 aa
AA seq
DB search
MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK
FKLALRIRNPKNRLKKILDACKNKGKCEGGDEIDIPGQNTDEPVKKSRGGCGAQQPKITI
EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDS
LLGCRKITKRDTFIPKDVFMNILMWWEDFDGKVPTPAILKPEPLWTGKQVFNLIIPKPIN
LIRYSSWHSENERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQHAFSIGIGDTIADASTMETINQTISAAKEKVKQLIRDAQEKKL
EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK
LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ
LATEIAPSGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP
GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLN
ADVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYFEMPDEEV
ALDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFGQDLTCIFNDDNAEKLILRIRIM
NDESPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKTQKFDESEGFKP
NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP
YHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPASPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYNPQSAKYS
PSLAYSPSSPRLSPSSPYSPTSPTYSPTSPSYSPTSPSYSPSSPTYSPSSPFNSSGSPDY
SPSSPQYSPSTGYSPSQPGYSPSSTSQYTPQTSDKDDRGTR
NT seq
5526 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgatttccgttctctccggcggaggtcgccaaagtccggatggttcagttc
ggaatactcagtcccgatgagatcagacaaatgtctgtggtgcaaattgagcacggtgag
actacggagagagggaagccgaaggttggaggattgagtgaccctcgacttggaactatt
gacagaaagctcaagtgtgagacttgcacggcgagtatggctgaatgtcctggccacttt
ggacacttggagcttgctaagccaatgtttcacattgggtttttaaagacagtgttgact
ataatgcgttgtgtttgcttcaactgctctaaaattctagctgacgagaatgatcacaaa
tttaagctagctttgaggatcaggaatcccaagaacaggctgaaaaagattctggatgct
tgcaaaaacaaaggcaagtgtgaagggggagatgaaattgatattcctggacaaaatact
gatgaaccagttaaaaagagtcgcggtggctgtggtgctcagcaaccaaagattacgatt
gaagggatgaaaatgattgcagagtacaaagctcaaaggaagaaaagtgatgaccaagaa
cagcttcctgaacctgtagagaggaaacaaaccctttctgcagaaagggttcttggtgtt
ctgaaaaggataagcgacgaggactgtcagttgttgggcttgaaccctaagtatgcccgt
cctgactggatgattttacaagttcttccaattcctcctccacctgtgagaccttctgtg
atgatggacacatcctctaggagtgaggatgatttaactcatcagctggctatgatcatc
aggcacaatgagaatcttaagagacaggagaggaacggatctcctgcacatattatttct
gagtttgctcaattattgcagttccacatagcaacatattttgataatgagttgcctgga
ctgccaagggctactcaaagatccggaaggcctatcaaatcaatatgtagcaggctcaag
gcaaaagaaggacggattagaggtaacttgatgggtaaaagagttgatttttcagctcga
acagtcattacacctgatccaacaatcaacattgatcaattgggagtgccgtggagtatt
gctttgaatctaacataccctgagaccgtgactccatacaacattgaaaggttgaaggaa
cttgttgagtatggaccccatcctccacctggaaaaactggtgccaagtacatcattcgt
gatgatggacaaaggctcgatctcagatatttaaagaaaagtagtgatcaccatttggag
cttggctacaaggttgagcgtcatttgaatgatggagactttgttctcttcaaccgtcag
cctagtcttcataaaatgtccatcatggggcatagaatcaaaatcatgccatattctaca
ttccggcttaacttgtctgtaacttcaccatataatgctgattttgatggggatgaaatg
aatatgcatgttcctcagtcttttgaaaccagagctgaggtgttggagcttatgatggtg
cctaaatgcattgtgtcaccacagtcaaacaggccagtgatgggaattgtccaagattca
cttttaggatgcagaaaaatcactaagagggatacttttatcccaaaggatgttttcatg
aacatattgatgtggtgggaagattttgatgggaaagttcctactcctgcaatattgaag
ccagaaccgttatggacagggaaacaagttttcaatctcatcattcctaagcctataaac
ctaatcagatattctagttggcacagtgagaatgaaaggggatccataacccctggggat
accatggtcagaattgagaaaggtgaactacttactggaacactttgcaaaaagacactt
ggaacatctactggaagtctcattcacgtgatttgggaagaggttggccctgatgcagct
cggaaatttcttgggcatactcagtggcttgtaaactactggcttttgcagcatgctttt
agcattggaattggtgatacaattgctgatgcttccactatggaaaccataaatcagact
atatcagcagctaaggagaaagtgaaacaacttatcagggatgcccaagagaaaaagttg
gaggctgagcctggtcggacaatgatggattcatttgaaaacagagtgaatcagacacta
aatagagctcgtgatgatgctggaaatagtgctcaaaaaagtttatctgagagcaacaat
ctgaaagctatggtgacagctggttccaaaggaagttttatcaacatatctcaaatgact
gcttgtgtgggtcaacagaacgttgaaggtaaacgaattccatatgggttcatagatagg
acattgcctcatttcacaaaagatgattatgggcctgaaagtcgtggctttgtggagaac
tcatatctgcgaggattgacccctcaagagttcttttttcatgccatgggtggtagggaa
ggtcttattgatactgccgtgaagacctctgaaactgggtacatccagaggcgactggtg
aaggctatggaggacatcatggttaaatatgatgggactgttagaaattctttgggagac
gtcatacagtttctttatggggaagatggtatggatgcggtttggattgaaacacagaag
ctggattcccttaaaatgaaaaagacagaatttgatagggtgtttaggtatgaatttgat
gatgaaaactggaagcctacctacatgcttgaagagcctgtagaagacttaaaaaccatc
cgagaatttcgtaatgtgtttgaagctgaggttcagaaactcgaagctgatagatatcaa
cttgcaactgagatagcccctagtggtgacagttctctcccactacctgttaacttgaag
aggcttatctggaatgctcagaagacatttaaggttgatttccgaaggccttctgatatg
catccaatggaaattgtggaagccattgataagctgcaggagcggcttaaggttgttcct
ggtgaagatcttttaagtcaagaagctcaaaagaatgctactctcctgtttaacattctt
cttcgcagcactttcgcaagtaaaagggtcttggaggaatacaggctttctcgagaggca
tttgagtgggtagtgggagaaatagaatcaaggttcttgcagtcactcgtagcctctgga
gaaatgattggttgtgtagctgcccaatcaattggtgaacctgctactcagatgactctt
aacactttccattatgctggtgtcagtgcaaagaatgttactcttggtgttcctaggtta
agggaaatcattaatgtggcaaagagaattaaaacaccttctctgtctgtgtacttgaat
gctgatgttggtaagactaaagagagagccaagagcgtgcagtgtgctttagaatatacc
actctaaggagtgtgactcaagctacagaggtgtggtatgatccggatccgatgagtaca
ataattgaagaggatgttgatttcgtgaagtcctactttgaaatgcccgatgaagaagtt
gcccttgacaaaatctccccttggttgcttcgcatagagctgaatcgtgaaatgatggtg
gataagaagttgagtatggctgacattgcagagaagattaatcttgaatttggtcaggat
ttgacttgtatatttaatgatgataatgctgaaaaacttatacttcgtatcagaattatg
aacgatgaatcacccaagggtgagattcaggatgaatctgctgaagatgatgttttctta
aagaaaatagaaagcaacatgctgactgaaatgaccttacgtggtatccctgacatcaac
aaagtttttataaagaatactaaaacccagaagtttgatgagagtgaaggttttaagcct
aatgaggaatggatgcttgatactgaaggtgtcaaccttctggctgtgatgtgccatgaa
gatgttgatgcgaccaggaccacaagcaatcacttaattgaagttattgaagttcttggt
attgaggcagttcggcgagctcttttggatgaattgcgtgttgtcatttcgtttgatggt
tcctatgtcaattacaggcatttggctattctttgtgatacaatgacttatcgggggcat
ctgatggccattacacgtcatggtatcaaccggaatgatactgggccaatgatgagatgc
tcatttgaagagacagttgatattctgcttgatgctgcagtatatgctgagactgattac
ttgaggggtgtcactgaaaacattatgctaggtcagcttgcccctattggcacaggtgaa
tgtgcattgtatcttaatgatgagatgctgaagaatgccattgagctccaactgcctagt
tatatggacggtcttgattttggcatgactcctgctcgctctccaatatctggaactcca
tatcatgaaggcttgatgtctcctagttatttgttgagtccaaatttgcgtctgtctcct
acgtcggatgcccagttttcaccttatgttggtgggatggcgttttctcccacctcatct
cctgggtacagtccatcctctccaggctatagtccatcatcgcctgggtacagccccaca
tcacctgggtacagtcccacatctcccggctacagtcccacatcaccaggttacagtccg
acctctcccacatatagccctagttctccaggatatagtcctacaagtccggcttattca
ccaaccagtccatcctactctcccacatcacccagctatagcccaacatcacccagctac
agtcctacatcacccagctacagccccacatcacccagttatagcccgacttctcccagc
tacagcccgacttcacctgcatacagcccaacttcacctgcctatagccccacttcacct
gcttacagtcccacttcaccttcatacagtcctacgtcaccttcatacagccccacttca
ccctcttacagccctacctccccatcatatagccctgcttcccctgcttacagccccact
tcacctggatacagccctacgtcaccctcatatagcccaacatccccatcgtatagtcct
acttccccatcgtatagtcctacttcccctagttacaatccccagtcagcaaagtacagt
ccttcgttagcatattctccaagcagtccaagattgtctccatcaagtccatatagtccc
acatccccaacctacagccccacgtccccatcatattcaccgacatcaccgtcttattca
ccatcaagcccaacatacagtcccagcagcccatttaattctagtgggagcccagactat
agcccaagttcaccccaatatagtcccagtacgggttactcaccaagtcaacctggttac
tcaccatcgtcaaccagccagtacactcctcaaactagtgacaaggatgatagaggcact
cgctga
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integrated database retrieval system